KEGG   Citrus x clementina (clementine): CICLE_v10010658mg
Entry
CICLE_v10010658mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K12828  splicing factor 3B subunit 1
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CICLE_v10010658mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cic03041]
    CICLE_v10010658mg
   03036 Chromosome and associated proteins [BR:cic03036]
    CICLE_v10010658mg
Spliceosome [BR:cic03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    CICLE_v10010658mg
 Complex B
    CICLE_v10010658mg
 Complex C
   U2 SnRNP specific factors
    CICLE_v10010658mg
Chromosome and associated proteins [BR:cic03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    CICLE_v10010658mg
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_ECM29 HEAT_EF3_N Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N UME
Other DBs
NCBI-GeneID: 18055335
NCBI-ProteinID: XP_006450667
UniProt: V4UCX6
LinkDB
Position
Unknown
AA seq 1265 aa
MDPEIAKTQEERRRMEQELASLTSLTFDRDLYGGTDRDAYVSSIPVNDEDDANVDSIDSE
VARKLASYTAPKSLLNEMPRGGDDDGSNDNLGFKKPGRIIDREDEYRRRRLQRVISPERH
DAFAAGEKTPDPSVRTYVEVMREQAHMREREETLKQIAQKKKEEEEAAKAESGSKRRNRW
DQSQDEAVPAPAKKAKPEAASSDWDLPDSTPGVSGRWDATPTPGRVSDATPSAGRRNRWD
ETPTPGRVADSDGTPAGGVTPGATPAGMTWDATPKGLATPTPKRQRSRWDETPATMGSAT
PMAGATPAAAYTPGVTPVGAVDVATPTPSAINLRGALTPEQYNLMRWEKDIEERNRPLTD
EELDAMFPQEGYKILDPPPSYVPIRTPARKLLATPTPLGTPLYQIPEENRGQQFDVPKEA
PGGLPFMKPEDYQYFGALLNEDEEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLT
DKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEP
LLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG
IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQK
VRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAL
YASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWV
RRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLG
ASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWR
LNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKA
IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRIC
FELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIV
AETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMD
RDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRV
ALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPE
LMMFV
NT seq 3798 nt   +upstreamnt  +downstreamnt
atggacccagaaatcgcgaagacgcaagaagaacgacgacgaatggagcaagagctcgca
tcacttacctctttgaccttcgatcgcgatctctacggcgggaccgaccgcgatgcttac
gtcagttcgattcctgtcaacgacgaggacgatgccaatgtcgactccattgattctgag
gttgctcggaaactcgcgtcttacacagcccccaagtctctcttaaatgagatgccacgt
ggaggcgacgacgatggtagtaatgataacttagggtttaagaagccgggcaggattatt
gaccgtgaggatgagtataggagacggaggttgcagcgcgtgatttcgccggagaggcat
gacgcgtttgccgcgggggagaagacgcctgatccgagtgtgaggacatatgttgaagtg
atgagagagcaagctcatatgagagagagggaggaaactttgaaacagattgctcagaag
aagaaggaagaggaagaagctgccaaagctgaaagtgggtccaaaagaaggaataggtgg
gatcagtcccaggatgaggccgttccagcacctgccaagaaggctaaaccagaagcagcc
tcatcggattgggacttaccggattcgacaccaggtgtgagtggtcgatgggacgcaact
cccacgcctggaagagtgtctgatgcgactccgtctgctgggagacgaaacagatgggat
gagacaccgacacctggaagggtggctgattcggatggtaccccagccgggggtgtcact
ccgggggccactcctgctggtatgacttgggacgctactcctaaaggcttagccacgcct
acgccaaagcggcagcgttctaggtgggatgagacccctgccaccatgggcagtgccacc
cctatggctggagccacgcctgcggctgcttatactcctggtgtcactcctgtgggtgca
gttgacgtggcaactccaacgcccagtgctattaatcttcgtggagcacttacgcctgag
caatataatttaatgagatgggagaaggatattgaagaaagaaaccggccgttaactgat
gaagagcttgatgctatgtttcctcaagaagggtataagattttggatccaccaccatcc
tatgtgccaataaggactccagccaggaaattgttagcaactcctacaccattagggaca
ccgctgtaccaaattcctgaggagaatcgtgggcagcagtttgatgtgcctaaagaggcg
cctggcggcttgccgtttatgaagccggaggattatcagtactttggggctttgctgaat
gaggatgaggaggaggagttgtcgccggatgagcagaaagagagaaagattatgaagctt
ttgttgaaggttaagaatggcactcctccacagaggaagactgctttgagacagcttact
gacaaggcaagagagtttggtgcaggtccgttgtttaatcgtattctacctttacttatg
caacccactttagaagatcaggagaggcatcttttggttaaggttattgatagggtgctg
tataagttagatgagttggttaggccttatgtgcataagattcttgtcgttattgagcct
ttgttgattgatgaggactattatgcccgtgtggagggaagagaaattatatccaatctg
agtaaggctgcggggttggcaacaatgattgctgctatgcgtccagatattgataatatt
gatgagtatgttaggaacacaactgctagggctttcagtgttgttgcttcggctcttggg
attcctgctctgttaccctttttgaaagccgtttgccaaagtaagaaatcttggcaagca
cgacacactggaattaagattgttcagcagattgctatcttgattggctgtgctgtcctt
ccgcatcttaggtctcttgtggagattatagaacatggtcttaatgatgaaaatcagaag
gtcaggacgattacggccttgtctctagctgctcttgccgaggcggctgccccatatggt
attgagagctttgactcagtcttgaagccattgtggaagggtatcaggtcccaccgtggt
aaggtcttggctgcatttttgaaggctattggttttatcattcctcttatggatgcactg
tatgccagctactatactaaggaagtcatgtttattctaattcgtgagttccagtctcct
gatgaagaaatgaagaaaattgtgttgaaagttgtgaagcagtgtgtgagtactgagggt
gtggaagcggattatattcgaagtgatattcttccagagttctttcgcaatttctgggtt
agaaggatggctttagataggagaaattataagcagcttgtggagactactgtggagatt
gcaaacaaggttggtgttgctgatatagtagggagaattgttgaggatctgaaagatgag
agtgaaccttacaggcgaatggttatggaaacaattgagaaggtggttgcaaacttgggc
gcatctgatattgatgctaggttggaagagctccttattgatggaattctgtatgccttc
caagagcagaccagtgatgatgccaatgtgatgcttaatggttttggtgcagttgtaaat
tctcttgggcagagagtgaaaccttaccttccgcagatttgtggtaccataaagtggcgt
ttgaataacaaaagtgctaaggtgaggcagcaggcagctgatcttatttcaaggattgct
gtggtaatgaagcagtgccacgaggagcaattgatgggtcaccttggtgttgtattgtac
gagtacttgggagaagaatatcctgaagttctgggttcaattttgggagccctgaaggcc
attgttaatgttattggtatgacaaagatgaccccacctatcaaggatttgcttcctaga
ttgactccaattttgaagaatagacatgagaaagtccaggagaactgcattgatcttgtt
ggtcggattgctgatcgtggagctgagtttgtgcctgctagagagtggatgaggatttgc
tttgagcttcttgagatgcttaaagcccacaagaagggtattcgacgagctactgtgaac
acatttgggtacattgctaaagccattgggccacaagatgtgctggctactcttttgaac
aatctcaaggttcaggaacgtcaaaaccgtgtttgcacgaccgtggcaattgcaattgtt
gctgaaacatgttcacctttcaccgttttgccagccctaatgaacgagtaccgtgtgcca
gagcttaatgtgcagaatggtgttttgaagtctctctccttccttttcgagtatataggt
gaaatgggcaaagactatatctatgcagtgactccattgcttgaagatgccctgatggat
agagatttggttcataggcagactgcagcttctgcagttaagcacatggctttgggagtt
gctggtttgggttgtgaggatgctctcgtccacttgctgaactatgtgtggcctaacatt
tttgagacttcccctcacgtaataaatgcagtcatggaagctattgaagggatgagggtt
gccctgggtgctgctgttgtgctaaactactgcctacaggggcttttccatcctgcaagg
aaggttagagaagtgtactggaagatttacaactcactgtatattggtgcgcaagacgca
cttgtggcggcttatcctaccctggctgatgagcagagtaacgtatatagcaggcccgag
ttaatgatgtttgtctga

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