KEGG   Citrus x clementina (clementine): CICLE_v10010808mg
Entry
CICLE_v10010808mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K12602  WD repeat-containing protein 61
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CICLE_v10010808mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cic03019]
    CICLE_v10010808mg
Messenger RNA biogenesis [BR:cic03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     CICLE_v10010808mg
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_Aladin WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_DCAF12 Beta-prop_SPT8 NBCH_WD40 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_WDR41 Cytochrom_D1 Beta-prop_NUP159_NUP214 Ge1_WD40 Beta-prop_WDR11_1st Beta-prop_HPS5 Beta-prop_VPS8 CFAP43_N Beta-prop_IFT140_1st Tricorn_2nd Beta-prop_ACSF4 PD40 DUF5711 Beta-prop_pof12
Other DBs
NCBI-GeneID: 18053763
NCBI-ProteinID: XP_006451553
UniProt: V4TW47
LinkDB
Position
Unknown
AA seq 315 aa
MKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHC
LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVA
GGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG
TISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEGKSLVTAMS
GHASWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRV
VSVSDDKSISLYEYS
NT seq 948 nt   +upstreamnt  +downstreamnt
atgaaatttgctggtctaaaatcagtcgagaacgcgcacgaggagtcagtatgggcggtc
acgtgggtaccggcgaccgagactcgaccggcgctcttgctgacgggatcgttggacgag
accgtgaagctgtggcggcccgacgacatgcagctggagcggaccaacactggccactgt
ttgggcgtagtctctgtggcagcgcacccgtctggtattatagctgcctctgcttctctc
gacagctttgttcgagtatttgatgtcgacaccaacgcctctattgctactctcgaagct
cctccttctgaagtctggcaaatgcagttcgatcctaagggtaccactctagctgttgct
ggagggggtagtgcatctgtaaagctctgggacacagccacttggaatctgattgccacc
ctgtcaattcctcgtccagaaggactgaagccgacagataaaagtagcagcaagaagttt
gttctatcagttgcatggagtcctgatggcagacgaattgcttgtggttcaatggatggc
acaatttctgtttttgatgttacccgtgccaaattcctgcatcatctggaaggccatttc
atgcctgtgcgttctcttgtttattcccctgttgatccacgtgttctcttctctgcatca
gatgatactcatgtgcacatgtatgatgctgagggtaaaagtctggttacggcaatgtct
ggtcatgctagttgggtgttgagtgttgatgcaagccccgatggagcagctattacaaca
ggctcaagtgatagaactgtaaagctctgggatcttaacatgagagcagccatgcagtca
atgactaaccacacagaccaggtctggggagtgtcatttagaccactaggaggtcgggtt
gttagcgtatcagatgacaaaagcatatcactctatgaatactcctga

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