Citrus x clementina (clementine): CICLE_v10010952mg
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Entry
CICLE_v10010952mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CICLE_v10010952mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cic03021
]
CICLE_v10010952mg
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10010952mg
Transcription machinery [BR:
cic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CICLE_v10010952mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CICLE_v10010952mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
18039624
NCBI-ProteinID:
XP_006430295
UniProt:
V4SWV5
LinkDB
All DBs
Position
Unknown
AA seq
829 aa
AA seq
DB search
MNGAVASSTVDAERPDRASSMSASRPWVDPTVKMQHSQRDALSEPIHEKNIGAYGDYDYG
SELSRSSGLGSGRTTGRVSDQGYEKPWYGSGSNISETIAGQRNGFNKKQGFPNYSASKSA
NAAAHLQQVQSIPKSSSSGLSSWKNSEEEEFMWDMHPRTSDHDAANISKNSRKDHLAVDG
PEKLELDNHLRKPQGIHDVSSSFDRETSSDSLSTEQKDQAAYRHQMPSPWQLKEADGLIA
ATLGGFPASSSSSLARTGGHPPVVSSHIGTSGFGTLASSASGSTGSLATQRFQSARAGSP
SGHSPMHHHSPSPSVPAHHPRQNMQNCTDRDYPHAQPLSRPDLKTSSFPGLVSSGPRGHS
TKDSPSILHPNSQLGNLPKVQPQDLKGSSPAVTSFQLNCQSQKPLLPQVSNFGAPSTKEA
VSDHSNPLDAEGLGQSGTSSLLASVLKSGILNSSITDGLANRALKEVGQIPLQLDIQPPL
PSGPPPPSLLTSSGARVGSGSLSGPSQEDPPATMTSSQRKVEQPPLPPGPPPSSLASSTS
PKASSVESKTSNPISNLLSTLVAKGLISASKTEPPSHTTPQVTSRMQNESPGISSSSPAT
VSSVPNLLPIPPSSTVDETSLPAPAGESSFALSESTTVETQNLIGLKFKPDVIREFHESV
IKRLFDGFPHLCSICGLRLKLQEQLDRHLEWHALRKPGLDDVDKISRRWYANSDDWVAGK
AGLPLGLESISCMEDSGKTIDEGEPMVPADDNQCACVMCGELFEDCYNQARGEWMFKAAV
YMMIPSGNGEVGTTNESSAKGPIVHGNCISENSVHDLRVISKVKVEKDA
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgaatggggctgtggctagctcaactgtagatgctgagaggccggatagagcatctagt
atgagtgctagcaggccatgggtggatcctacggtcaaaatgcagcattctcagagggat
gcactaagtgagcctattcatgagaaaaatattggagcatatggtgactatgattatggt
tctgaactttctcgaagttctggcttgggaagcggaagaaccactggaagggttagtgat
caaggatatgagaaaccttggtacggaagtggtagcaatatctcagagacaatagctggc
caaaggaatggtttcaataagaagcaaggatttccaaattactcagcatccaaatctgca
aatgctgctgcgcatctacagcaagttcagagcattccaaaaagtagcagcagtggcttg
tccagctggaaaaattctgaggaagaagagttcatgtgggatatgcatcctagaacatca
gatcatgatgcagccaatatttctaagaattcaaggaaagatcatttggctgtggatggt
cctgagaaattggagttggacaatcacctccgaaagccacaaggcatacatgatgttagc
tcaagttttgatagagaaacatcctctgattcactttccaccgaacagaaagaccaagct
gcttacagacaccagatgccgtcaccctggcaattgaaggaggcggatgggctgattgct
gcgacacttggtgggtttcctgcaagttcgagttcttctctggccaggacgggaggtcat
ccgccagtggtgtcatcccatattgggacctcaggttttgggactttggcaagttccgca
tcagggtctactggatccttagcaacacaaaggtttcaatctgcacgagctggatcacca
tctgggcactcacccatgcaccatcattctccatcaccttcagttccagcacatcatccc
cgtcaaaacatgcaaaattgtacagaccgggactatccacatgctcagcctctgtcccgt
cctgatttgaaaacatcttcattccctggacttgtaagcagtggtcctcgtggccactct
actaaagactcgccttctatcctgcatcccaatagccagcttggtaacttgccaaaagtt
caaccccaagacttgaagggttcatctcctgcagtgacttcatttcagctaaactgccag
tctcaaaagcctcttctccctcaagtttctaattttggggcaccctctactaaggaagct
gtatctgaccattcgaatcctcttgatgcagaaggtttaggtcaatcgggcacaagtagt
ttgttggcttctgtcttgaagagtggtattcttaatagttcaatcactgatggcctagct
aatcgggctttgaaggaagtggggcaaatcccattacagttagatattcagccccctcta
ccgagtggtcctcctcccccttcactgttaacttcttcaggtgccagagttgggtcagga
tctttatcaggtccttcccaggaagacccaccagcaacaatgactagttctcagagaaag
gtagaacaacctcctttgccacctggtccaccaccatcatctcttgctagtagtacttca
ccaaaagcttccagtgttgaaagtaagacttcaaacccaatttcaaacctattgagcacc
ttagttgcgaagggtctgatatctgcatcaaagactgagccaccatctcacaccacaccc
caggtaaccagtcggatgcagaacgagagccctggcatttcttcgagtagtcctgcaaca
gtttcttctgttccaaatttgttacccattccgccatcatccactgtggatgagacttct
ttaccagcacctgctggtgaaagttcttttgccttatcagaatccacaacagtggaaaca
cagaatctcataggattgaagttcaagccggacgtaatccgagaattccatgaatctgtg
attaagagactgtttgatggctttccacatttgtgcagcatatgtggccttcgccttaaa
ctccaagaacagcttgatagacatttggaatggcatgctttaagaaagcctggcctagat
gatgtagataagatctcaaggagatggtatgccaactcagatgattgggttgctggaaag
gcaggtcttcccctgggacttgagtctatcagttgcatggaagattctggaaagacgata
gatgaaggggagccaatggtgcctgcagatgataatcaatgtgcatgtgttatgtgtggt
gagctatttgaagactgttacaatcaggcaaggggtgaatggatgttcaaggcagcagta
tacatgatgattccatcagggaatggtgaggtaggaactacaaatgaaagttctgccaag
ggtccaattgttcatggaaattgtatatcagagaattcagttcatgacttgagagtgatc
agtaaagttaaagtggaaaaggatgcataa
DBGET
integrated database retrieval system
