KEGG   Citrus x clementina (clementine): CICLE_v10011020mg
Entry
CICLE_v10011020mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K12830  splicing factor 3B subunit 3
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CICLE_v10011020mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cic03021]
    CICLE_v10011020mg
   03041 Spliceosome [BR:cic03041]
    CICLE_v10011020mg
   03036 Chromosome and associated proteins [BR:cic03036]
    CICLE_v10011020mg
Transcription machinery [BR:cic03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     CICLE_v10011020mg
Spliceosome [BR:cic03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    CICLE_v10011020mg
 Complex B
    CICLE_v10011020mg
 Complex C
   U2 SnRNP specific factors
    CICLE_v10011020mg
Chromosome and associated proteins [BR:cic03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     CICLE_v10011020mg
    TFTC complex
     CICLE_v10011020mg
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd Beta-prop_RSE1_1st
Other DBs
NCBI-GeneID: 18038987
NCBI-ProteinID: XP_006429954
UniProt: V4UU81
LinkDB
Position
Unknown
AA seq 926 aa
MAVSEEVCSTAKSRSSPSSSSAPAPPPRNIHYLAKCVLKGSVVLQVAHGHLRSPTSNDVV
FGKETSIELVIIGEDGIVQSVCEQAVFGTIKDLAVVPWNDKFNAQNSQVMGKDLLVVISD
SGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCFIAVSAYEDRLGLFS
LSMSSGSDIIDKKICYPSESEVDTSASRIAQKNRISGTIWSMCFISTDPRQPSKEHNPIL
AIILNRRGALLNELLLVGWNIREHAISVLSCFFEAGPLAHSVVEVPRSYGFAFVFRIGDA
LLMDLRDPHNPSCVYRTSLNFLPPALEEQNFVDESCRVHDVDDEGLFNVAACALLELRDY
DPMCIDSDSGNAKEPSKHVCSWSWEPETDKIPKMVFCVDTGEFFMIEIAFGSDGLKVHLS
ECLYKGPPCKAILWVEGRFLSAFVEMGDGMVLKEENGRLVYTSPIQNIAPILDMSVVDYH
DEKRDQMFACCGVAPEGSLRIIRSGISLEKLLRTAPIYQGITGTWTVRMKVSDPYHSFLV
LSFVEETRVLRVGLNFTDVTDSVGFRPDVCTLACGLVADGLLVQIHQNAVRLCIPTMVAH
SGGIPLSYPVCTSWFPEHVSISLGAVAHNMIIVSTSNPCFLFILGVRSLSVSHYEIYEMQ
HMRLQSELSCISIPQKHPERRKSSSPISLVSNSSVPTLPAGVIIGYTFVIGTHRPSVEVL
SFVPKEGLRVLASGSIVLTNTMGTAISGCIPQDVRLVLADQFYVLAGLRNGMLLRFEWPP
DSNIPSSVVPIHSPISATFRSTENIRSGIAATSSFGSEMSAFNLTEESKDELPINLQLIA
TRHIGITPVFLVPLSDSLDADMIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSVEC
PKGILFVAENSLNLFYFWMLYNLGGK
NT seq 2781 nt   +upstreamnt  +downstreamnt
atggcggtttcggaggaagtgtgctcgacggcgaagtcgcgatcgtcaccgtcttcatcg
tcggcccccgcgccgcctcctcggaacattcattaccttgccaaatgcgttcttaaagga
agcgtcgttcttcaggtcgcccacgggcatctccgctctccgacctccaacgacgtcgta
ttcggcaaggagacgtcaatagagttagtaataattggtgaagatgggattgtacaatca
gtttgtgagcaggctgtatttggcacaattaaggaccttgctgttgtaccttggaacgac
aagttcaatgctcagaattcgcaggtgatggggaaagaccttctggttgttatttctgat
tcggggaagctctcatttctcgctttttgcaatgaaatgcacaggtttttcccggtggca
caggttcatctttcaaatccaggaaactcaaggcatcaacttggaagaatgctggcggtc
gattccagtggctgcttcattgctgttagtgcatatgaagatcgattgggtttgttttcc
ctctcaatgtcttctggaagtgatattattgataagaaaatatgttatccttctgaaagt
gaagtggacacatctgcttccagaattgcccaaaaaaacagaataagtggtacaatatgg
agcatgtgctttatttcaaccgatcctcgtcaaccaagtaaggagcataatcccatacta
gccattattctgaataggagaggggcgctcttgaacgaattgctgctagtgggatggaat
attagggaacatgctataagtgtgctttcatgtttttttgaagctgggccactggcacat
agtgttgttgaagttccacgttcttatggatttgcctttgtgttcaggattggtgatgca
ttattaatggatcttagagatcctcacaatccctcttgcgtttatagaacaagcctgaac
tttttaccccctgctctagaggaacaaaattttgttgacgagtcttgtagagtacatgat
gttgatgatgaaggtttgttcaatgttgcagcatgtgctttattggagctacgcgattat
gatcccatgtgtatagatagtgacagtggcaatgcaaaagagccctccaaacatgtgtgc
tcgtggagttgggaaccagaaactgataagattccaaagatggtgttttgtgtagataca
ggtgagttttttatgattgaaattgcttttggttctgatggccttaaagttcatctgtca
gaatgtctttacaaaggcccaccatgcaaggcaattttgtgggttgaagggaggttcctg
tctgcatttgtagaaatgggggatggaatggtcttgaaagaagaaaatggaagattagta
tacacaagtcccattcaaaacattgcaccgatattagacatgtcagttgtggattaccat
gatgaaaaacgtgatcaaatgtttgcatgctgtggagtggcaccagagggatcattaagg
attattcggagtggtataagtttagaaaaactattgagaactgcccctatatatcagggg
attactggtacttggacagttcggatgaaagtatctgatccatatcattcttttcttgta
ctatcatttgttgaagagaccagggtgctaagagtaggcctaaactttactgatgtgact
gattctgttggtttccggcctgatgtctgtactttggcatgtgggcttgtcgctgatggt
ttgctggttcagattcaccaaaatgctgttaggctttgtataccaaccatggttgcccat
tctgggggtatcccgttgtcatatccagtttgtacatcttggttcccagaacacgtaagc
atcagtttgggggcagttgctcataatatgataattgtttctacttctaatccatgcttc
ctatttattcttggggtcagatcactctcagtgagtcattatgaaatatatgagatgcaa
catatgagattgcagagtgagttatcatgcatttccatacctcaaaaacatcctgagcga
agaaaatcaagttctcccatcagtcttgtgagtaatagcagtgtgcctacacttccagct
ggagttatcattggttatacctttgttattggcacacataggccttcagtggaagttctt
tcatttgtacccaaggaagggttgagagttcttgcttctgggtcaattgtgttgacaaat
actatgggaactgctattagtggctgcattcctcaagatgtgagacttgtgttggctgat
cagttttatgttcttgcggggttgaggaatggaatgctccttcggtttgagtggcctcct
gactctaatataccttcatctgtcgtacccattcacagtcctattagtgccactttcaga
agtacagagaatattcgatcaggtatagcggctactagttcttttggttcagaaatgtct
gcttttaatttaactgaagagtccaaagatgagcttccgattaatcttcaattgattgcc
acccgtcacattggcatcactcctgttttccttgttcctctgagtgactcgcttgacgca
gacatgattgctctcagtgacaggccgtggttgttgcaaactgcaaggcacagcctggct
tatacttctatttcatttcaaccttcaacacatgcgactcctgtgtgttctgttgaatgc
cctaaagggattttatttgttgcagagaacagtctaaatttgttttatttctggatgtta
tacaatctggggggaaagtaa

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