Citrus x clementina (clementine): CICLE_v10011123mg
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Entry
CICLE_v10011123mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14408
cleavage stimulation factor subunit 3
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CICLE_v10011123mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10011123mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CICLE_v10011123mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
TPR_15
HAT_Syf1_CNRKL1_C
DUF1993
TPR_2
TPR_16
TPR_9
TPR_CcmH_CycH
TPR_11
Motif
Other DBs
NCBI-GeneID:
18037970
NCBI-ProteinID:
XP_006429695
UniProt:
V4SV92
LinkDB
All DBs
Position
Unknown
AA seq
770 aa
AA seq
DB search
MASSSVEPESEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWK
QYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDF
MLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWK
DYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQ
WIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWHAKSGSIDA
AIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF
LRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP
AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ
RRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDK
SALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATGASSA
LNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDI
PTGQMGKSPTTYPTPIPTGAARSASGISGSNKSHPTPSGSSLKQSKDKQSLKRKDIGQDD
DETTTVQSQPQPRDFFRIRQMKKARGAASSQTGSASYGSAVSGDLSGSTG
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatcatcggtcgagcctgaatcagaggaaaatataactggcgtagctgataaa
tacaatgtcgaaactgcagaaattcttgccaacagtgcactgcatttgcctgttgcacag
gcggcgcctatatatgagcaacttctttctgtgtttcccacagctgctaaattttggaag
cagtatgtggaggcttacatggctgtaaataatgatgatgctactaagcagttatttagc
cgatgtttgttgatctgccttcaagtccctctttggagatgctacattcgatttatcagg
aaagtctacgagaagaagggcacagagggccaggaagagacaaggaaagcttttgatttt
atgcttagccatgttggatcggatatatcatctgggcctatttggttggaatacatcacc
tttttaaagtcattgccagctctaaacgctcaggaggaatcacaacggatgattgctatt
cggaaagcataccaaagggctgttgttactcccacccatcatgtagagcaactctggaag
gattatgaaaattttgaaaattctgttagccgtcaactggctaaagggcttttgtctgaa
tatcaatcaaaatacaccagtgcaagggctgtatatcgggagcgaaagaaatattgtgag
gaaattgattggaatatgcttgcagtgccaccaactggatcttacaaagaagaacagcag
tggattgcatggaagaggctcttaacctttgaaaagggaaaccctcaacggatagacact
gcatcgtccaacaaaagaatcatattcacctatgagcagtgtctgatgtatctataccat
tacccggatatatggtatgactatgctacttggcatgcaaaaagtggctcaatagatgct
gcaatcaaagtatttcaacgagctttgaaggctcttccagattcagaaatgctaaggtat
gcttttgcagagctagaggaatcccgtggagcaattgcggctgcaaagaaattatatgaa
agtcttttgaccgacagcgttaatacaacagctctggcacatatacaatttattcgtttt
ctacgaaggactgagggagttgaagcagctcgcaagtacttccttgatgctcgtaaatcc
ccaaacttcacataccatgtatatgttgcttacgccctgatggccttctgtcaagacaaa
gacccaaagcttgctcacaatgtttttgaagcaggattgaaacgttttatgcatgagcct
gcatacatacttgaatatgcagattttttgtctcgtctgaatgatgatagaaacattcgg
gctttgtttgagagggcgttaagctctctaccacctgaggaatccattgaggtatggaaa
aggttcacccaatttgagcaaatgtatggagatttggatagcacgctgaaggttgaacaa
agaaggaaagaagctctttctagaactggtgaagaaggagcatctgcactagaggattca
ttgcaagatgttgtgtcccgttatagtttcatggatctttggccctgctcctctaaggac
ctggatcatttggtccgacaagagtggcttgtcaaaaacatcaacaagaaagttgataaa
tcagctctctctaatggacctgggattgtagataagggtccttctggcctgacaagcaat
tcaactacatctgcaacagtcatatacccagatacatctcagatggttatttatgatcca
aggcaaaaacctggcattggaatttctcctagcacaacagcaactggagcctcttctgca
cttaacgccttgtctaatcccatggttgcaacagggggtggtggaataatgaacccgttt
gacgagatgttgaaagcagcatcacctgcaatatttgcatttttagcaaacttgcctgct
gtggaaggtccaacaccaaatgtggatatcgtattatcaatttgtttgcagagtgacata
ccgacgggacagatggggaaatcaccgacgacttacccaactccaataccaacaggcgct
gctcgtagtgcaagcggcatttctgggtcaaacaaatcgcatcccactcctagtggttcc
tctcttaaacaatcaaaggataagcaatctttaaagagaaaggatatagggcaagatgat
gatgaaaccacaactgtccagagccagccacaaccccgggatttttttaggatacgccag
atgaagaaagcgcgaggagctgccagttcgcagacaggatcagcatcgtatggaagtgct
gtttcaggagatctctctggtagcacaggctga
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