Citrus x clementina (clementine): CICLE_v10011329mg
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Entry
CICLE_v10011329mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CICLE_v10011329mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10011329mg
Enzymes [BR:
cic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
CICLE_v10011329mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CICLE_v10011329mg
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CICLE_v10011329mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
18039275
NCBI-ProteinID:
XP_006429928
UniProt:
V4SW00
LinkDB
All DBs
Position
Unknown
AA seq
604 aa
AA seq
DB search
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR
KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG
NEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSGGETWFEVGRSKTY
TPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMG
HIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADI
VCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKK
YEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCV
ANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKV
EPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFT
HCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKP
RARR
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgctgagtgtgctgcgcgtgcaccttccgtcggatattcctattgtaggctgtgaactc
acgccgtacgtgctcttacggcgccccgataatgctgtcaccaccgaagatgtccccgag
tcggccccaattgatggtcatttcttgagatacaagtggtatcgtatacaaagtgataga
aaagttgctgtatgtagcgtacatccttctgagcaagccactctgcagtgtctaggttgt
gttaaggctaaaatacctgttgccaaaagttaccattgctcaccaaagtgcttctctgat
gcatggcagcatcatcgtgttcttcacgatcgtgctgcaagtgctgtaaatgagaatggg
aatgaagaggaggagttatttggccgtttcaatagcactggatctggagttatcaatgct
agtttatctggttctgcctcaaattctagcctgacgaatggttcaacacctttatatcct
gctgcagttacgcggagcggaggtgaaacttggtttgaagttggacgatcaaaaacatac
actccatcagccgatgatattggccatgtcctgaagtttgagtgtgtcgtagtagatgca
gaaaccaaactccccgtggggcatcccaacactctgttgacttcccgagtcattcctgcc
ccttctcctagtcctcgtcgcttgttcccggtcaatggatctgacatgaacatgatgggg
catatcgattctgatggccgtatttcaagcactggaactttttctgtgctctcatacaat
attttgtctgatgtgtacgcaacaagtgaatcatatagttactgcccttcatgggctcta
tcgtgggcatatcgcagacagaatttgttgcgggaaattattggctaccgtgctgatata
gtttgtcttcaggaggttcaaaatgatcactttgaggaattttttgcccctgagctcgac
aaacatggctatcaagctctctataagagaaaaacaaatgaggtttacaatggaaacccc
catacaatcgatggctgtgcaacatttttccgtagagatagattttcacatgtcaaaaaa
tatgaggttgaatttaataaggctgctcagtctttgactgatgctatacttccaagtgcc
cagaagaagaatgctttgaatcgattagttaaggataatgttgcattaatagtggttttg
gaagcaaaatttagtaaccagggtgctgatacacctgggaagaggcagcttctctgtgtg
gcaaatacacatgtaaacgtccaccaagagctgaaggatgttaagctgtggcaggttcat
acgctcttaaaaggattggagaaaatagctgctagtgctgacattccaatgctggtgtgt
ggggatttcaattctgttcctggaagtgctcctcatgcacttcttgccatggggaaggta
gagccagtgcatccagatttggctgtagatcctcttacgatcttgcgtcctcacactaag
ttgacacatcaacttccattggttagtgcttactcatccttcgcaagaattggagttggt
ctcggcatggagcatcagaggaggagaatggaccctactaccaatgaaccgttatttaca
cattgcacaagagattttattggtaccctagattacatattttacacagcggattcttta
agcgttgaatccttgttggaactcttggatgaggatagcttgaggaaagacacagccctt
ccttctccagagtggtcctctgatcatatagcacttttagctgaattccgctgcaagcct
agagctagacgctga
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