Citrus x clementina (clementine): CICLE_v100114061m
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Entry
CICLE_v100114061m CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cic
Citrus x clementina (clementine)
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v100114061m
03041 Spliceosome [BR:
cic03041
]
CICLE_v100114061m
03036 Chromosome and associated proteins [BR:
cic03036
]
CICLE_v100114061m
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CICLE_v100114061m
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CICLE_v100114061m
mRNA cycle factors
Common to processing body (P body) and stress granule
CICLE_v100114061m
Spliceosome [BR:
cic03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CICLE_v100114061m
Chromosome and associated proteins [BR:
cic03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
CICLE_v100114061m
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
18038466
NCBI-ProteinID:
XP_006429935
UniProt:
V4SW04
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MSTSWADSVSASENAAPASSNTSALPRPTRSTYVPPHLRNKPPTSSEPPASSRESTEPAS
GPRWGSGSRPDFGRGQGYGSGGRSGGGWNNRSGGWDRREREVNPFGDDVGAEQPVAEEEN
TGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISI
AGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH
VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY
LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAKYIFL
AVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADAL
EHWLYMNGFPATTIH
NT seq
1306 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttcatgggctgattcagtgtctgcatctgagaatgcggcccctgcttcttct
aataccagtgccttacctcgtcccactcgatccacttatgttccgccacatctccgtaac
aagccaccaacctcttctgaacctcctgcttcgtcacgagaatctactgaacctgccagt
ggcccccgctggggcagtggttcaaggcccgattttgggcgtggtcagggttacggctct
ggtggtagaagtggcggtggttggaataatagaagtgggggttgggaccgaagggaacgt
gaagtgaacccgtttggtgatgatgttggtgcagagcagccggttgctgaagaagaaaac
acgggtattaattttgatgcttatgaggatattccggtggagacaagtggagaaaatgtg
ccaccggcagttaatacatttgcagaaattgatttgggggaagctttgaatcttaatatt
aggaggtgcaagtatgtcaaaccgacgcctgttcagcgtcatgcgattcctatatcgatt
gctgggcgagatttaatggcctgtgctcagacagggtcggggaagacagctgccttttgt
tttccaattattagtgggattatgcgtgagcagtacgtacagagaccacgtggatcgcgg
actgtttatcctctggctcttattcttgcccccacaagagaactctcgtctcagatccat
gttgaagccaagaaattttcctatcaaactggtgtcaaggtggtggttgcttacggagga
gcaccaatcaaccaacagttgcgagagcttgagagaggggttgatattcttgtggctact
ccaggaagattggttgatctgcttgagagagctagagtttcattgcagatgattagatac
ttagctctcgatgaggcagatcggatgctggatatgggttttgagcctcaaatcagaaaa
atagtgcaacaaatggatatgcctccacctggtatgagacagacaatgcttttcagtgcc
accttcccgaaagagatacagagattggcatcggacttcctagcaaagtatatttttctg
gctgttggaagggttggttcaagcactgatttaattgttcaaagagttgagttcgttcat
gagtcagacaaaagaagccatctgatggacctcttgcatgcacaggtggcaaatggagtt
catggcaagcaagctttgacattagtttttgttgagacaaagaaaggtgctgacgcattg
gaacactggttgtatatgaatgggtttcctgcaactactattcatg
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