KEGG   Citrus x clementina (clementine): CICLE_v10012530mg
Entry
CICLE_v10012530mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K12881  THO complex subunit 4
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03013  Nucleocytoplasmic transport
cic03015  mRNA surveillance pathway
cic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CICLE_v10012530mg
  09122 Translation
   03013 Nucleocytoplasmic transport
    CICLE_v10012530mg
   03015 mRNA surveillance pathway
    CICLE_v10012530mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cic03019]
    CICLE_v10012530mg
   03041 Spliceosome [BR:cic03041]
    CICLE_v10012530mg
Messenger RNA biogenesis [BR:cic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CICLE_v10012530mg
    TREX complex
     CICLE_v10012530mg
Spliceosome [BR:cic03041]
 Complex C
  Other components
   EJC/TREX
    CICLE_v10012530mg
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CICLE_v10012530mg
SSDB
Motif
Pfam: RRM_1 FoP_duplication YHR127W_C RRM_10
Other DBs
NCBI-GeneID: 18037951
NCBI-ProteinID: XP_006429036
UniProt: V4SYJ3
LinkDB
Position
Unknown
AA seq 256 aa
MTSALDMSLDDIIKSNKRSSSRGRGGGGRGSGLGPARHTFKRSVNRTAPYSKPVQAPQAT
WPQNMIFNGAVAAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR
SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGN
EIGTSRSHLRMGGAIPIERPRRGRGGLGGRGGRGGARGGRGRGRGQGAKPNLSVEDLDAD
LEKYHTEAKQSDGMVH
NT seq 771 nt   +upstreamnt  +downstreamnt
atgactagcgccttggacatgtctctcgatgatatcatcaaatccaacaagaggtccagt
tctcgcgggcgcggcggaggcggcagaggttcgggcctaggccccgcccgtcacaccttc
aagcgcagcgtcaacagaacggcgccctattccaagccggttcaagctccgcaagccacg
tggccacagaacatgatcttcaacggtgctgttgcagctgctgcggctcgatcttcatcg
atagagagtggcaccaaactttatatttcaaacttggaatacggtgtttctaatgaagac
atcaaggagcttttttcagaggttggtgaacttaaacggtgttctgttcattttgatagg
agtggaagatcaaagggaactgcagaagttgtcttaacacgacgagctgatgctatagca
gctgtaaagagatacaataatgtccagctagatggaaaaccaatgaaaattgagataatt
ggaacaaatattggacctccagctgctgtgcttccaattacaaatgtcatgtatggaaac
gaaattggcacttcaagaagtcacctaagaatgggaggtgccattcccattgaaaggcct
cgccgtggccgtggtggcctcggtggccgtggaggcaggggaggtgccagggggggtcgt
ggaagaggtagaggtcaaggtgcaaagccaaacctttctgtagaagatcttgatgcagat
ttggagaagtaccatacagaagcaaagcaatcagatggcatggttcattga

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