Citrus x clementina (clementine): CICLE_v10012530mg
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Entry
CICLE_v10012530mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12881
THO complex subunit 4
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03013
Nucleocytoplasmic transport
cic03015
mRNA surveillance pathway
cic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CICLE_v10012530mg
09122 Translation
03013 Nucleocytoplasmic transport
CICLE_v10012530mg
03015 mRNA surveillance pathway
CICLE_v10012530mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10012530mg
03041 Spliceosome [BR:
cic03041
]
CICLE_v10012530mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CICLE_v10012530mg
TREX complex
CICLE_v10012530mg
Spliceosome [BR:
cic03041
]
Complex C
Other components
EJC/TREX
CICLE_v10012530mg
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CICLE_v10012530mg
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
YHR127W_C
RRM_10
Motif
Other DBs
NCBI-GeneID:
18037951
NCBI-ProteinID:
XP_006429036
UniProt:
V4SYJ3
LinkDB
All DBs
Position
Unknown
AA seq
256 aa
AA seq
DB search
MTSALDMSLDDIIKSNKRSSSRGRGGGGRGSGLGPARHTFKRSVNRTAPYSKPVQAPQAT
WPQNMIFNGAVAAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR
SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGN
EIGTSRSHLRMGGAIPIERPRRGRGGLGGRGGRGGARGGRGRGRGQGAKPNLSVEDLDAD
LEKYHTEAKQSDGMVH
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgactagcgccttggacatgtctctcgatgatatcatcaaatccaacaagaggtccagt
tctcgcgggcgcggcggaggcggcagaggttcgggcctaggccccgcccgtcacaccttc
aagcgcagcgtcaacagaacggcgccctattccaagccggttcaagctccgcaagccacg
tggccacagaacatgatcttcaacggtgctgttgcagctgctgcggctcgatcttcatcg
atagagagtggcaccaaactttatatttcaaacttggaatacggtgtttctaatgaagac
atcaaggagcttttttcagaggttggtgaacttaaacggtgttctgttcattttgatagg
agtggaagatcaaagggaactgcagaagttgtcttaacacgacgagctgatgctatagca
gctgtaaagagatacaataatgtccagctagatggaaaaccaatgaaaattgagataatt
ggaacaaatattggacctccagctgctgtgcttccaattacaaatgtcatgtatggaaac
gaaattggcacttcaagaagtcacctaagaatgggaggtgccattcccattgaaaggcct
cgccgtggccgtggtggcctcggtggccgtggaggcaggggaggtgccagggggggtcgt
ggaagaggtagaggtcaaggtgcaaagccaaacctttctgtagaagatcttgatgcagat
ttggagaagtaccatacagaagcaaagcaatcagatggcatggttcattga
DBGET
integrated database retrieval system