Citrus x clementina (clementine): CICLE_v10014033mg
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Entry
CICLE_v10014033mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K27498
focadhesin
Organism
cic
Citrus x clementina (clementine)
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10014033mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
CICLE_v10014033mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3730
Motif
Other DBs
NCBI-GeneID:
18051051
NCBI-ProteinID:
XP_006446569
UniProt:
V4W1P4
LinkDB
All DBs
Position
Unknown
AA seq
1543 aa
AA seq
DB search
MTSAELDHLRHRYKIPSCVELRLPEPEEAMENPQYGFGGATCDLSEELLLIFPILNLMSS
PSKSVKGVASDLLVLLEKLLVKLLAAPKMEVAMNAGNPSIIGFGSIIFRLLKNLWFQDQN
STSGSFFLSLISTGNYRIEEMDEGPGPWTSQLRELLLCIIDSKKSSLPVSASQEALSTEM
SMLLGAIASVLVIHPSLGSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNK
LPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQ
GVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQ
SLAYLCEADVIDFYTAWDVIAKHVLDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTVLK
ILLDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFKQRSFEILISETNPVVL
RAMEGFQVKIITHEHSNRRRFVKEKKVPGSKIEKLLDIFPRVIFSSDKKFYARELPGAAL
LCLSFTRKDLRNQGEARGLQNVLSGYENALIDIAASFQLSRNIFVALLSLQSWKFFMQRW
VRAIIMSIDAKAESIVPDRTFKAANDILKTLMRVAEESMPRSAENIALAIGALCSVLPQS
AHTIKSTASKFLLSWLFQHEHEHRQWSAAISIGLISSSLHVTDHKQKFQNITGLLEVLCS
SRSILVRGACGIGLGFSCQDLLTWAAAADGTNLDKETYKIEEMELLGRTVKALSMMIFQL
APSSSKILEGLSAHFPVKTCDVKMNVTSEFSDDGLEDDIWGVAGLVIGLASSISVIYRAG
KHDVVLKIKDLIVSWIPHVNSLVENYGSGGERSEIVLSVGSSLALPIIVAFCRGVELMDD
KELNHLVHGYRELISELLSVNKSGNFHKSLLMASCVGAGSLLACIVNEGAHSLNVDHVNA
FLELFRKCYSNPYPPIIHLGGMLGVVNALGAGAGYLIHVDPLNSSMRAGYAQKEHPYTLG
PLFSDPVCEQHVTSLMQEMFLVAQTSDDHQLQQYAAWAMSFLRCHLWSKELLNTDNNIKA
DLLGSKSVSQRFSDDNVVMKLGLWLSHLNYSGTDATARVVTVSTILRCLTRAPRLPTLDW
GAIIRCCMRYEAQIAKGLPPDSAYKRGILREECIQFSLAHANQFHPLLSFLDELSDLPRF
KTLELNLQATLLFHLADLIKLFSGSRLEKLFDDMADYLFSVTSYQAYNPDQKSFLRVSFW
NGLHRCLEEASLDSLEHIPNMERCMEVLFALLPASQYAAIIGVNQKNLVEEWSAAVRCLG
KARREWVLDFLQVLHVNPLQGDVQLSEVVKKMQAKAKLVRIGSFPLTELGKLKAYILNFK
SLGVWDVLIEVVAALQHAEEGVRRQWLVDTIEISCVSCYPSTALQFVGLLSGSCCRYMPF
LILDSSTVLNDLPVTLPSLLSKPGWETVAEPFMSYLWASTERIYNWVVTDVTSSQSSPST
QPIDESENDMAALLLHVMHRACISLKDYLPLEKQLRLSNMLVR
NT seq
4632 nt
NT seq
+upstream
nt +downstream
nt
atgacttcggctgaattagatcatcttagacatcggtataagattccttcctgcgttgaa
cttaggcttcctgagcctgaagaagccatggagaacccgcaatatgggtttggtggagct
acatgtgatcttagtgaggagctattgttgatatttcccatcctaaaccttatgtcgtcc
ccttctaagtcagttaaaggagtggcaagtgatttgcttgttttgttggagaagcttttg
gtgaaattgttggcagcaccaaagatggaagtggccatgaatgcagggaatccatccatc
attggatttggatctattatttttaggcttttgaaaaatctatggtttcaggatcaaaat
tcgacgtcaggttctttctttctcagtttgatttcaacaggaaattatcgcatcgaagaa
atggatgaagggccaggaccttggacttctcaactaagagaacttttgctatgcattatt
gatagcaaaaaatcctccctacctgtctctgcatctcaagaggctttatctactgaaatg
tccatgttacttggtgccattgccagtgttttggtgatacatccatcattgggaagttct
gctgtagatgctttcgctactgttggcaagatggatcctaaactgggagttccattgttg
ctggccattttgttttacagtaatatgttcaccagaaaagatgttgtgtgccagaataag
ttgccaaagcttttgggaatgcttccatcaattgcttcacagtccgtcatgattcctctt
gtagttcaaaccatcttgccaatgctgcataaaaatgcaaagccagttttatatgctaca
gccactcgcttgctctgtcagacctgggagatcaatgatcgcgcctttgggagtttgcaa
ggagtattacagccaaaattgctcattgacttcaagtctgagagaaacatttgtataagc
atagctgcttctattcatgatgtttgcagaaaagaccctgataggggagtggatcttatc
ttgtctgttgcggcttgcattgagagccgtgatccaataattcaagctcttggtttacag
agccttgcttatctttgtgaagctgatgttattgatttttatactgcctgggatgtcatt
gcaaagcatgtgctagactactccctggatccaatgcttgcccaaagcttatgcattctt
ctaagatggggagcaatggatgcagaagcttattcagaagcttcaaggactgttctgaag
attttgttggatactggtaccactacccatctaggccatgagttacaatgggcaaaggct
agagcctctgcctttgaggccttgactcaatatgaggtctcacatattgataaaaatatt
ttagatttcaagcaaaggagctttgagattcttatttcagagacaaacccagttgtactc
agggcaatggaaggatttcaagtcaagattataacacatgagcatagcaatcggcgaaga
ttcgtgaaggagaaaaaagtacctggaagtaagattgagaaattactggatatttttcct
cgggttatcttctcttcagacaagaaattttatgccagagagttacctggtgcagccctg
ttatgtctttccttcacgcgcaaagatttgaggaaccaaggggaagcaagaggattacaa
aatgtactttctggatatgagaatgcattgatcgatatagcggcttcatttcagctctca
agaaatatttttgtcgcacttctttcattgcaatcatggaaatttttcatgcaacgctgg
gtcagagctattattatgtccattgatgctaaagcagaatccattgtgccagatagaact
tttaaagctgccaatgatattttgaagactttgatgcgagtggcagaagaatctatgcct
agatctgctgaaaatattgcactggctattggtgctctgtgttcggtattgcctcagtca
gctcatactattaaatcaacagcttcaaagtttctattaagttggttgtttcagcatgaa
catgaacaccgccagtggtctgctgcaatttccattggattgatctcaagctctttacat
gtaactgaccataagcaaaaatttcagaacatcactggacttttggaggttttgtgtagt
agcagaagcatccttgttagaggagcctgtgggattggcttgggattttcatgccaagat
cttctaacctgggctgcagctgctgatggcactaacttggacaaggaaacctacaagata
gaagaaatggaattactgggaaggacagtgaaagcgttatctatgatgatattccagcta
gctccctcttcatctaaaattctagaaggtctctctgctcattttcctgtgaagacttgt
gatgtaaagatgaatgtaacttctgaattttcggatgatggcttggaggatgacatatgg
ggtgttgctggacttgtcattggtttagcaagctccattagtgtaatatacagagctggg
aaacatgatgttgtgctgaagataaaagacttaattgtttcctggattcctcatgtaaat
tctctggtcgaaaattatggttctggaggtgaaagatctgagatagttttatctgttgga
tcctctttggcacttcccattatagtggctttctgtcgaggagtagaattgatggatgat
aaagaactgaaccatcttgtgcatggctatagggaacttatctctgagttattatctgtt
aataaatctggcaactttcataaaagccttctgatggcatcatgtgttggagctggaagc
cttcttgcctgcattgtcaatgaaggggcgcattctttaaatgttgatcacgtaaatgct
tttctagaattgtttagaaaatgttactctaatccttaccctcctatcatccatctgggt
gggatgcttggagttgttaatgctttgggagcaggcgctggatatcttatacatgttgat
cctttgaactcatctatgcgtgctggatatgcacaaaaggaacatccttataccctgggt
cctctcttttcagatcctgtttgtgaacaacatgtgacatcattgatgcaagagatgttt
cttgtggctcaaacttctgatgaccatcaactgcagcagtatgcggcatgggcaatgtca
tttcttcgatgtcatctttggtcaaaagaactactaaatactgacaacaatatcaaggct
gatttattaggttcaaaatctgtttctcaacgtttctccgacgacaatgtggtcatgaag
cttggtctgtggttaagccatcttaattattctgggacagatgccactgcacgtgttgta
acagtatcaactattttacggtgtcttacacgagcacccagactgccaaccttggattgg
ggagcaattatcagatgctgcatgagatatgaggcccagattgctaagggattgccacca
gactctgcttataagagaggaatccttagagaggaatgtatacagttttcactagctcat
gccaaccaatttcatccgcttctatctttccttgatgaactgtctgatctacctaggttc
aaaacacttgagctgaacttacaggcaactttgctcttccatttggcggacctgataaaa
ttgttctcaggttcaaggcttgagaaactatttgatgatatggcagactatttattttca
gttacttcgtaccaagcgtataatcctgatcagaaaagcttcctacgagtttcgttttgg
aatggtctccatcgttgtttggaagaagcttctcttgactctctagagcacattcctaac
atggaaaggtgcatggaggttctttttgccttgttgcctgcatcacaatatgctgccatc
ataggagtgaatcaaaagaatctggtggaggagtggtctgcggcagttagatgcctaggg
aaggctcgacgagaatgggtattggactttctgcaggttttacatgtgaatccattgcaa
ggagatgtccagttgagtgaggtggtgaaaaagatgcaagcaaaagccaagctagttaga
attggttccttcccattgactgagctcggaaagctaaaagcttacatattgaacttcaaa
tcacttggtgtctgggacgtacttattgaagttgttgctgctctgcaacatgcagaagaa
ggtgtcagaagacagtggcttgttgacaccatcgaaattagctgcgtttcatgttatcct
tcgacggcactgcagtttgttggtcttctctccggtagctgctgcagatatatgcctttt
ctgattctggactcttctaccgtgttgaatgatctaccagtgaccctcccttctcttcta
tcaaaacccggttgggaaactgttgcggaaccattcatgtcttatctttgggcatcaact
gaacgcatttataattgggtggtaactgatgtaacctccagtcagtcatcacctagcaca
caaccaattgatgaaagtgagaatgacatggctgctcttttattacatgtgatgcaccgt
gcctgcatatctttgaaagattacttgcctcttgaaaagcagcttaggctcagcaatatg
ttggtcaggtga
DBGET
integrated database retrieval system