Citrus x clementina (clementine): CICLE_v10014076mg
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Entry
CICLE_v10014076mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12879
THO complex subunit 2
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03013
Nucleocytoplasmic transport
cic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CICLE_v10014076mg
09122 Translation
03013 Nucleocytoplasmic transport
CICLE_v10014076mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10014076mg
03041 Spliceosome [BR:
cic03041
]
CICLE_v10014076mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
CICLE_v10014076mg
Spliceosome [BR:
cic03041
]
Complex C
Other components
EJC/TREX
CICLE_v10014076mg
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CICLE_v10014076mg
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
Motif
Other DBs
NCBI-GeneID:
18052089
NCBI-ProteinID:
XP_006448121
UniProt:
V4UGC9
LinkDB
All DBs
Position
Unknown
AA seq
1193 aa
AA seq
DB search
MELRGLFQYLVNQLKRGKGIELVLLQELIQQMANVQYTENLTEDQLDAMAGSETLRYQAT
SFGVTRNNKALIKSTNRLKDSLLPRDEPKLAIPLLLLIAQHRSVVVINADAPYIKMVCEE
FDRCHGTLLQYVEFLCSAVTPATAYAQLIPSLNDLVHQYHLDPEVAFLIFRPVMRLFKCQ
GSSAVFWPLDDGDAANNTTINSESEPSEDIGNVILDLGSQKPVMWSDLLDTVKTMLPSKA
WNSLSPDLYTTFWGLTLYDLYVPRDRYESEIAKQHAALKALEELSDNSSSAITKRKKDKE
RIQESLDRLTNELHKHEENVASVRRRLSREKDRWLSSCPDTLKINMEFLQRCIFPRCTFS
MPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGKFLFETLK
IAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLES
AEYMEIRNALILLTKISGVFPVTRKSGINLEKRVAKIKNDEREDLKVLATGVAAALANRK
SFWVTDEEFGMGYLELKPAPSLASKSLSGNVVAVQGSAINVSQSEPGTGNSVKDHISRAK
PGDGRLERTESISHVKSDNVKLKGSSLTNGSDIHSSMPSTAVQAEMSRVVENQKQVDEDE
NMAKVAMKNSAESESKASVKRSVPSASLTKAPKQDLAKDDNKSAKAVGRTSGSSANDRDF
SSHAAEGKQGGATTVSSAAAVTANLVSAKGSSSSSRASDMHGNESKTDGGVAKSSEVRLS
TGKSDGNEVSDAPKSSSSRTMHSPRHDSSVAASKSGDRLQKRTSPSEDPDRPSKRYKGDT
ELRDSDGEVRVPDRERSADPRFADLDKIGTDEQSMYRTTDRSKDKGNERYERDHRERLDR
LDKSRVDDIIPEKQRDRSMERYGRERSVERGQERGADRAFDRLAEKAKDDRNKDDRSKLR
YNDSSSEKSHVDERFHGQSLPPPPPLPPHIVPQSVNAGRRDEDADKRFGSTRHSQRLSPR
HDEKERRRSEENSLVSQDDAKRRREDDFRDRKREDREGLSLKMDERERERDRDRDREKAN
LLKEEMDANAAASKRRKLKREHLPSGEAGEYSPVAPPYPPLAIGISQSYDGRDRGDRKGA
AMQRTGYMEEQSMRIHGKEVATKMARRDSELIYEREWEDEKRQRAEQKRRHRK
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaggggtcttttccagtatctggtgaaccagttaaaaagggggaaggggatt
gagctagttctcctacaggaacttattcaacaaatggcgaatgtccaatacactgagaac
ctgacggaggaccagttggatgccatggcaggaagtgagacactccggtatcaggctaca
tcatttggagtaaccaggaataacaaggctctgatcaaatccaccaataggttaaaagac
tcattgcttccaagggatgaaccaaagttggcaattccccttttgttgcttatagctcag
catcgttctgtggttgttataaatgcagatgcaccttacataaaaatggtttgtgaggag
tttgatagatgccatggaactcttcttcagtacgtggaattcctttgtagtgctgtaact
ccagctactgcttatgctcaactgattccatctcttaatgatcttgtccaccagtaccac
ctggatcctgaggtagcctttttgatatttcgccctgtaatgaggctctttaagtgtcag
gggagttctgctgttttctggcctttagatgacggtgatgctgcaaataacacaactata
aattcagagtctgaaccttcagaagatattggcaatgtgattctggatcttgggtctcag
aagcctgtaatgtggtcagatctccttgacactgttaaaactatgttgccctcaaaagcc
tggaacagcctctcccccgatctctatacgactttctgggggctcacactctatgatcta
tatgttcccagagaccgatatgaatctgaaatcgccaaacagcatgccgcacttaaagct
ctggaagagctttcagacaattcgagttcagcaattactaaaaggaaaaaagacaaggaa
agaattcaagagtctttagatcgtctgactaatgaacttcataagcatgaagaaaatgtt
gcatcagttcgtcggcgactttctcgtgaaaaggacagatggttgagttcctgccctgat
actctgaagatcaatatggagttccttcagcgttgcatttttcctcgctgcactttcagc
atgccagatgctgtctattgtgccatgtttgttcatactcttcattcccttggcacacca
tttttcaacacagtaaaccacattgatgttctgatttgtaaaaccttacaacctatgata
tgctgctgcactgaatatgaagcaggcagactagggaagtttttgtttgagacattaaag
attgcttaccattggaagagtgatgaatctatatatgaacgtgaatgtggaaacatgcct
gggtttgctgtatattatagatatcccaacagccaacgagtcacatatggccagttcatt
aaggttcactggaaatggagccaaagaatcacgcgtttattgattcagtgcttggaatca
gctgagtatatggaaattaggaatgctcttatattgttgacaaaaatatctggtgtcttc
ccagttactcgaaagagtgggatcaatcttgaaaagcgggtagctaaaataaaaaatgat
gagagggaggatctcaaggttttggcaactggtgttgctgctgctttggctaatagaaaa
tctttctgggttactgatgaagaatttggcatgggatatcttgaactgaaaccagctcca
tcacttgcttcgaagtctttgtctggtaatgtagtagcggtgcaaggttctgctattaat
gtttctcaaagtgaacctggcacggggaattcagtaaaagaccatatttcaagagcaaaa
cctggtgatgggaggttggaaagaacagaaagcatctcacatgtaaaaagtgataacgta
aaattgaaaggcagttcattgactaacggttctgatattcattcatccatgccctcgact
gctgtgcaagcagaaatgtcaagagtggtggaaaatcaaaaacaggtggatgaagatgaa
aacatggccaaagtagctatgaagaactcagcagagtctgagtcaaaagcttcagtgaaa
cggtcagtgccaagtgcatcacttacaaaggcaccaaaacaggatcttgccaaggatgat
aataaatcagcaaaagctgttggcagaacttcaggctcttccgccaacgacagagatttc
tcttctcatgcagcagaggggaagcaaggtggagcaaccactgtttcttctgcagctgct
gtcaccgctaatttggtttcggctaaaggctcatcttcatcttcaagagcatcagatatg
catggtaatgaatctaagactgacggtggagttgccaagtcttctgaagtaaggctttcc
actggtaaaagtgatggcaacgaggtttctgatgcaccaaagtcctcttcatcccgaacc
atgcattctccaaggcatgatagctctgttgctgcttccaagtctggtgataggcttcaa
aaaagaactagtccctctgaagatcctgacagaccaagtaaacgttacaaaggggatact
gaattaagagattctgatggtgaagttcgagtacctgacagagagaggtcggcagatcct
cgatttgcagatcttgacaaaattggaacagatgaacagagtatgtataggaccacggat
aggtcaaaagacaagggcaatgaaagatatgaaagggaccacagggaaagattggaccgt
cttgataagtcccgcgtggatgatatcatacctgaaaaacaaagggataggtcaatggaa
aggtatgggagagagcgttcagttgagagaggacaagagaggggtgctgatagagcattt
gataggcttgctgaaaaagctaaagatgatagaaacaaggatgaccgaagtaaattacgt
tacaatgattcatcttcagaaaaatctcacgttgatgaacggtttcatgggcaaagcttg
cctccaccacctcccctacctcctcacattgttccccaatctgtgaatgctggtagaaga
gatgaagatgccgataagaggtttggaagcacccgacattctcaaaggctttctccaaga
catgatgaaaaggaacggagacgatctgaagaaaattccttagtttcgcaggatgatgca
aaacgtagaagggaagatgattttcgagatagaaagagagaagaccgagagggtttgtca
ctgaagatggatgaaagggagagagagagggacagggacagggacagggagaaagccaac
cttttgaaggaggaaatggatgccaatgctgctgcctctaagagaagaaaacttaaaagg
gagcatcttccatcaggggaagctggtgagtattcacctgttgcccctccctatcctccc
cttgctattggtatttcacagtcatatgatggaagagataggggagaccggaagggagcc
gcaatgcagcgcacaggttacatggaggagcaaagtatgaggattcatggtaaagaagta
gccaccaagatggcccgtcgtgattcagagctaatctatgagcgcgagtgggaagatgag
aagcggcaaagagctgaacagaagagaagacatcggaagtag
DBGET
integrated database retrieval system
