Citrus x clementina (clementine): CICLE_v10014079mg
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Entry
CICLE_v10014079mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CICLE_v10014079mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10014079mg
03012 Translation factors [BR:
cic03012
]
CICLE_v10014079mg
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CICLE_v10014079mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
CICLE_v10014079mg
Translation factors [BR:
cic03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
CICLE_v10014079mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
Myosin_head
ABC_tran
PhoH
T2SSE
NACHT
NPHP3_N
Dicer_dimer
TsaE
Motif
Other DBs
NCBI-GeneID:
18051088
NCBI-ProteinID:
XP_006448337
UniProt:
V4U6K2
LinkDB
All DBs
Position
Unknown
AA seq
1181 aa
AA seq
DB search
MKDRPPPSYGAVYVPPHHRLRSVVTATPYCSSISPDASPLSHLQTKKQQLNSKTKSKNNN
NYGSNHKDDNKYNNCGSNDNSKKNLQHNSAYSDVLSEEGSDREPESMLQPGSSPYDNVED
WKQKLTLLLYDKEKQELISREKKDRRDFEQISALASSMGLYSHLYAKVVVFSKVPLPNYR
FDLDDRRPQREVIVPMGLLRRVDSYLRKYLSQKSKTKKSLSDFSVSRSSSSSSLATEEGL
FEQPEPLASSKSVMDKILWRRSLQLHDQQHSWQESPDGRKMLEFRRNLPAYKEKNRLLAA
ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASE
RGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMN
EDFLLIVLKDLLSRRLELRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDIL
DMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESL
SCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLL
LTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALN
NTSCLLPSWISKVSAQQRRGRAGRVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCL
QIKSLRLGTIAEFLSRALQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPK
LGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLALVRA
FEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRD
ERLIRAVICYGLYPGISSIVQNGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEK
MKVNSVFLKDSTAVSDSVLLLFGGSISQGEIDGHLKMMGGYLEFFMNPSVADMYQCIRRE
LDELIQNKLLNPRLNIHTHEDLLAALRLLVAEDQCEGRFIFGHQVFKPSKPSVVGAQPAF
ISRTESGPGGDNSKSQLQTLLTRAGYAAPSYRTKQLKNGQFRSTVEFNGMEIMGQPCNNK
KNAEKDAAAEALQWIMGGIKTSEECINHMSILLKRSKKDHS
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaaggataggcctccgccttcgtacggcgccgtttacgtccctcctcaccaccgtctc
cgctccgtcgtcaccgccacgccttattgctcctcaatcagccccgatgcctctcctctt
tctcaccttcaaaccaaaaaacaacaactgaatagtaagaccaaaagtaaaaataacaat
aattatgggagtaatcataaggacgacaacaagtataacaattgtggcagtaatgataat
agtaaaaaaaatttgcaacacaattcagcgtacagcgatgttctatcggaggagggctct
gatcgtgagccggagtcgatgttgcaaccgggttcttctccttatgataatgtggaggat
tggaaacagaagttaaccctgcttttatatgacaaggagaagcaagaattgatttcaagg
gagaaaaaggatagacgtgactttgagcaaatctcagctttggctagcagcatgggtttg
tacagccatctttatgcaaaagttgttgtctttagtaaggtccctttgccaaactacaga
tttgacttggatgatagacgtccgcagagagaggtgattgtacctatgggtttgcttaga
cgggttgattcctatcttaggaagtacctctctcaaaagtcgaagaccaaaaaaagcctt
tcagacttttctgtctcgaggtcaagcagtagcagtagccttgctactgaggagggtctt
tttgaacaaccagagccacttgcatccagtaagtctgtcatggataaaattctgtggcgc
agaagtttgcaactgcatgatcagcagcactcttggcaggagtcaccggatggtagaaag
atgcttgaatttcgtaggaatctccctgcttataaagagaagaacagactattggcagcc
atttcacaaaatcaggttgttattatatccggtgaaactggctgtggcaagaccacacaa
gttcctcaattcattctagaatctgaaatcacgtctgtacggggtgctgtttgtagtatc
atatgtacacaaccaagacgtatttctgctatgtctgtttctgagagagttgcttcagag
agaggcgagaaactgggtgaatctgttgggtataaagttcggttggaaggtatgaaagga
agggatactcgccttctcttttgcaccacaggcatattgttgagaaggttgctggttgac
agaaatttgaaaggtgtaactcatgttattgtcgatgaggttcatgaacggggaatgaat
gaggattttctgctcattgtccttaaagatcttctctctcgtcgcctagaactaaggttg
gttctgatgagtgcaacactagatgcagagcttttctcatcctactttggtggggctaca
gtaataaacattccgggtttcacatacccagtcagaactcattttctggaagacattttg
gacatgactggttacagattgaccccatacaatcaaattgatgattacggtcaagaaaaa
atgtggaaaatgagcaaacaagcaccgagaaagaggaagagccaaattgcctctgctgtt
gaggatacgctcaaagcagctaacttcaatgagtatagctctcagacacgggagtctttg
tcatgctggaatcctgattgtattggttttaatctgatagaatatgttttatgctatata
tgcgagaaagaaaggcctggtgctgttctagtttttatgactggttgggatgacataaat
tcactgaatgataagctacaagctaatcgtatcttaggagatccaacccgagttttgttg
cttacttgccatggttccatggctagttcagagcagaggttaatatttgatgaacctgaa
agtggagtgaggaaaatagtccttgctactaacatagcagagacaagtatcaccattaac
gatgttgttttcgtcatcgactgtgggaaagcaaaggagacatcctacgatgcactgaat
aacacttcttgtctgcttccttcctggatttctaaggtttctgctcaacaaagaagagga
agggctggccgtgtgcaacctggagaatgttaccgtctctaccctagatgtgtatacgat
gcttttgctgaatatcagcttccagaaattttgaggacacctttgcagtctctttgtttg
caaattaaaagtttaagacttgggactatcgctgagttcctatccagggctcttcagtcg
cctgaattactagcagttcaaaatgctattgaatatttaaaaatcattggggcactggac
cacaatgaagagttgactgttctgggacaatatttggctatgcttccaatggagcctaaa
cttggaaagatgctcatattgggtgctatcttcaattgcctggaaccagttttaaccatc
gttgctgggcttagtgtcagagatcctttcttagcaccaatggacaagaaggatcttgca
gaggctgcaaaatctcagttttcacatgattacagtgaccatcttgcacttgttcgggcc
tttgaaggatggaaagatgctgaaagaggcctggctggatacgaatactgttggaaaaac
tttttatcagcaccgtcgatgaaagttattgattctcttcgaaaagagttcctctctttg
ctcaaggatactgggctcgttgattgtgacacatctatctgcaatgcctggggtcgtgat
gaacgcctcattcgagcagttatttgttatggtttatatcctgggatttcctctattgtg
caaaatggaaagtcaagttcactgaaaaccatggaggatggtcaagtgtttctatattct
aattcagtcaatgctcgggaatctgaaatcccctatccatggctggttttcaacgagaag
atgaaagtgaactctgttttccttaaggattctacagctgtctctgattcagtactgctc
ctatttggtggaagcatatcgcaaggagaaatcgatgggcacttgaaaatgatgggagga
tatttggaattcttcatgaacccctcggttgctgacatgtatcaatgcataaggagagaa
cttgatgagctgatacagaacaaattgctgaatcccagattgaacatacatacccatgaa
gacctcctggctgcattgcgattgctagttgccgaggatcagtgtgagggcagatttata
tttggtcaccaggtgtttaagccctccaagccctcagttgtgggggcacagcctgctttc
atttcaaggactgaaagcggacctgggggtgataattctaagagtcagctccaaacactg
ctcacaagagcaggatatgctgcacctagctacagaacaaaacaattgaagaatggccag
ttcagatccaccgtggagtttaatggaatggaaattatggggcaaccttgcaacaacaag
aagaatgcagaaaaagatgcagcggctgaggctttgcagtggataatgggtgggatcaaa
acaagcgaggaatgtataaatcacatgtcgatattgctaaagagaagtaagaaggatcat
tcctag
DBGET
integrated database retrieval system
