Citrus x clementina (clementine): CICLE_v10014158mg
Help
Entry
CICLE_v10014158mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CICLE_v10014158mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cic03021
]
CICLE_v10014158mg
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10014158mg
Transcription machinery [BR:
cic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CICLE_v10014158mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CICLE_v10014158mg
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Ribonuc_2-5A
Motif
Other DBs
NCBI-GeneID:
18052468
NCBI-ProteinID:
XP_006449074
UniProt:
V4W7Z1
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MESGKILQNPRPSPSPSLAFTNNNKAMPNELAQKPSTPIIDKFRALLKLREEEARVGDGA
GTTLSTDEIVQLYETVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICTRILEAPVNH
KLPSLYLLDSIVKNINKEYVRYFSSRLPEVFCEAYRQVHPDLYSAMQHLFGTWSTVFPQA
VLHKIEAELQFSSQVNKQSSNVNSLRASESPRPTHGIHVNPKYIRQFEHSNTDSVGGQRS
NPAGSVGRATFALGANKLHPSSTSRLGRSLSPLGIGSEGDEFAVENSPRRLEGTSPSHPV
FDYGIGRAIGRNEEVSEWRNPNRFESTSTSYNLSNGHEHQGPRALIDAYGSDRRASNNKP
SQVGHMGINGMGNKVASRSWQNTEEEEFDWEDMSPTLLDRGRKFDFLPSSVPLYGSTGAR
PDFSKLNASSLESDIRTNHSSQAQLPLLDDSSVTAEDSVSLLGSGRGTGKVSGFQSEPNQ
NLGSRYPQESWNLPHPFSRSSHPPNGRGRGRDSHIPFPGSGVPSLGVDKAAPYIDKFVGA
DALFVRPPAVVSRIGSSGPDLLSTGAIQSSTGAWAPMNLHKPHLPPGQPVYPQQKQTRTQ
FDSINAAGSILNQGLSKSLYNSESKELSLMKPQLHDQHATPNQQNQGRAQFLSQEATNKF
LPSIAASMPPHLLAPPLSHGYTQRGHNAVMGMVPSNPVPAGQQPLHVQSIQNSSLHLQGR
PSPPLPPGPPPASSQMIPGSQSAGLVVPSQQPGHAFSGLISSLMAQGLISLTTQTPVQDS
VGLEFNADLHKLRHESAISSLYANLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRK
QKPSRKWFVSASMWLSGTEALGTDAIPGFLPAEPILEKKDDEEMAVPADEDQNVCALCGE
PFDDFYSDETEEWMYKGAVYMNAPNGSTEGMDRSQLGPIVHAKCRSESTVIPSDDFKRDE
GGSSEEGNQRKKLRS
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggaatctgggaaaatcttacaaaaccctagaccttcgccttcaccttcacttgcattc
actaataacaacaaggcgatgccaaatgagctggcgcagaagccgtcaacgccgataatt
gacaagtttcgggcgcttttgaagctacgagaggaggaggctagggttggggatggtgcc
gggacgacgcttagtacggatgagattgtgcagctatacgagacggtgttggctgagctt
actttcaattcgaagccgattattactgatctgacgataattgccggagaacagagagcc
cacggcgatggcattgccgaagcaatttgcaccaggattctcgaggccccagttaatcac
aaactgccgtcgttgtatcttttggacagtatagttaagaacatcaataaagaatatgtt
aggtacttttcttcccgtttacctgaggttttttgtgaggcatacaggcaagttcatcct
gacttgtatagtgctatgcaacacctctttggcacttggtcaacagtttttccacaagca
gtcctccacaagattgaggcggaactacagttttcttctcaagtaaataaacaatcatca
aatgttaattctctgcgagcgtctgagtctcctcgaccaactcatggcatacatgttaat
cctaaatacatacgtcagtttgaacattcaaacacagatagtgttggaggtcaaagatcg
aatccagcaggtagtgtcggtcgtgcgacttttgctcttggtgctaataagctgcatcca
tcttcaacttccagacttggaagatctttgtcacctttaggaattggatcagaaggtgat
gagtttgcagtggaaaattcacctagaaggcttgagggcacctctccatctcatccagta
tttgattatggaataggcagagcaattggcagaaatgaggaggtgagtgaatggcgtaac
cccaatagattcgaatctacttctacttcttataatcttagcaatggacatgagcatcaa
ggacctagagctttgatagacgcatatggaagtgacagaagagcttctaacaacaaacct
tcgcaagttggacacatgggtataaatggaatgggcaataaggtagcatcaagatcatgg
cagaatactgaagaggaggagtttgattgggaagatatgagccctactttactagaccgt
ggcaggaaatttgactttttgccatcatctgttccactatatggatcaactggggcaagg
cctgacttcagcaagttgaatgcttcctccttggagtctgatattaggaccaatcattct
agtcaggcacagctacctcttttggatgattcttctgttactgctgaagattcagtttct
ttgctgggttctggtcgcggaacaggtaaagtatctgggtttcaatctgagccaaatcaa
aatctaggttctcgttatcctcaggaaagctggaatttgccacatcccttctctcgatca
tcacaccctcctaatggcaggggacgagggagagattcccatattccctttccgggcagt
ggtgtaccttccttgggtgttgataaagcggctccttatattgacaagtttgtgggtgct
gatgcactatttgttaggcctccagcagttgtgtctagaataggttcttctggtcctgac
ttgcttagtactggggctatacagtcatcaactggggcttgggccccaatgaacttgcat
aaacctcacctgcctcctggacaacctgtttatccacagcagaagcagacaaggactcag
tttgattcaataaatgccgctggtagcattttgaatcagggactaagtaaatcattgtat
aattccgaaagcaaggaactgagtttgatgaagccacaactgcacgatcaacatgctact
ccaaatcaacaaaaccagggccgggcacaatttctttctcaggaggctacaaataaattt
ctcccctccattgcagcatcgatgccacctcacctactggcaccacccttgagtcatggg
tacacccaacgagggcacaatgctgtcatgggtatggttccatcaaatccagtgcctgct
ggacaacaacctttacatgtccagagtattcagaatagctccttgcatttacaggggagg
ccgtcgccaccacttcctcctggtccccctcctgcttcttctcaaatgatacctgggtct
caaagtgcagggctagttgtccccagtcaacaaccaggccatgcattttctggtttgatt
agttccctcatggcacaaggtttgatctcattaacaacgcaaacccctgtgcaggattct
gtgggacttgagtttaatgccgatcttcataagttgcgccatgagtcggcaataagttcc
ctttatgctaatcttccgcgacagtgcaccacatgcggcctacgttttaagtgtcaagaa
gagcacagcagtcatatggattggcatgtgactaagaaccggatgtccaagaaccgtaag
cagaagccttctcgtaaatggtttgtaagtgctagcatgtggcttagtggtacagaggca
ttgggaactgatgcaattcctgggtttttacctgctgagcccattttggaaaagaaagat
gatgaagaaatggctgtccctgctgatgaagaccagaatgtatgcgcattatgtggagaa
ccctttgatgatttttacagtgatgagaccgaggaatggatgtataaaggagctgtctac
atgaatgcaccaaatgggtcaacagaaggcatggatagatctcagttaggtcctatagtg
catgctaaatgcaggtctgagtctactgtgattccctctgacgattttaaacgtgatgaa
gggggaagtagtgaagagggtaatcaaagaaaaaaattgcggagttaa
DBGET
integrated database retrieval system
