Citrus x clementina (clementine): CICLE_v10015184mg
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Entry
CICLE_v10015184mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CICLE_v10015184mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cic03021
]
CICLE_v10015184mg
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10015184mg
Transcription machinery [BR:
cic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CICLE_v10015184mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CICLE_v10015184mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
18051817
NCBI-ProteinID:
XP_006445686
UniProt:
V4U9M0
LinkDB
All DBs
Position
Unknown
AA seq
458 aa
AA seq
DB search
MQPLFNAFANQTQSNSSTSTLPQMAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPAT
APLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLP
QQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFVQPIKDVSGNNT
LKSCSSEPRQGQNLQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQ
KSHFHQMHNGKRKFGFYNDQKPKGHGNGKATKFGLANQMNQPQEKKRKSLALTYTEQEVK
QWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPS
YYLLDSKKQVRGRVENTMPLNKRGRFHNNYDKRGRNKRKDQFSKDQKLADKDSSNTSSFN
KKKPTLLQKLLSADVKRDKSHLLQTFRFMALIHFSGLA
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgcaacctctcttcaatgcttttgctaatcaaacccagtccaattcttccacttctacg
cttcctcagatggcttttagacctaatatgttacaaaattcagtgccaatgcaacctcaa
acgggtataatgaaccctcaagttccatttcctttgagtaattccaatatgccggcaaca
gcaccgttgatgaatcaaaataatttcatgaatgcttctaaccctcttcttatcgcacaa
agtaatcatctgggtttgcctcaactgggtcatatgtttcctgtacatgggaatttcggc
aacatgccgctgaatgtaagtcaaggacagttacttggtcctaatttgtcgaatctgcct
caacagtttaaccaaaacatgggtttctcaaatgggcaaatgtgtctgcaaagtgtgaat
caacttttgtctatgcaaatgtcaaatccctgcttgtttgggaatccacagtttggtctt
gtgaaccaaaatcagcaaaactttgttcagccaataaaggatgtgtcaggaaataatacc
cttaaatcttgttcaagtgagcctcgtcaaggtcagaacttgcaaccttctgctttcatg
aggtcacagaggaactttattcaaaatggtcagggtagcatttcaaagagcaattctaaa
aaagtttcaggaaaaaacttcatcaaaaatcgaacaaaagagttttcacaggggtttcag
aaatctcactttcatcaaatgcataatgggaagagaaaatttgggttttataatgatcaa
aaacctaaaggacatggcaatggaaaggcaacaaaatttggtctggctaatcagatgaac
caacctcaagaaaagaaaagaaaatctcttgctttgacctatacggagcaagaggtcaaa
cagtggtgtgaagagcgtaggaagaactatccaacaaaagccaatataaacaagaaactg
actgaaaagcaatcaaactctgatgttattgataaagaggccaaaatgcgacgtgagcaa
ctcaaggagatcttggcaaagcaggctgagctgggtgttgaagttgcagaaattccatcg
tattatcttttagattcaaagaaacaagttcgtggaagggtggagaatacaatgccattg
aataagagggggagatttcacaacaattatgataaaagaggaagaaataaaagaaaagat
cagttttcaaaggaccaaaagttagcagataaggattcatccaacacctcttctttcaac
aagaagaagccaacacttctgcaaaagcttctgagtgcagatgtaaagagagataaaagc
catttgttacagacttttcggttcatggcattaattcatttttcaggattggcctga
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