Citrus x clementina (clementine): CICLE_v10018430mg
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Entry
CICLE_v10018430mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CICLE_v10018430mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10018430mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CICLE_v10018430mg
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CICLE_v10018430mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
18047824
NCBI-ProteinID:
XP_006445333
UniProt:
V4TE04
LinkDB
All DBs
Position
Unknown
AA seq
2421 aa
AA seq
DB search
MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGL
KNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLA
LSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQI
LSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMN
ELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCST
MSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQ
EPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQAN
HAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFA
VFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEM
IPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPF
HHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSS
TSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEY
RFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALE
QFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVS
SQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQP
SSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRE
TPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF
HDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG
RNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLA
EIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQ
LVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGI
SDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMD
RAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCK
EPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEI
AQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQN
QSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTT
ESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQS
LPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIIL
RCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDE
ERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVIS
ELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAHS
HTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLL
KGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCC
PVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGS
NFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLL
QFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNII
LSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGS
SFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSL
TAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEI
IQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARS
CGGLKPVDDSMVSGWVPDNTH
NT seq
7266 nt
NT seq
+upstream
nt +downstream
nt
atgctcaggctttcgtcaactgttcccagtcagattcggttcttgttgcagagcttgaat
gaagccaacgccgattccgtcttcagagagctctgtcagttcattgaatatggaattgag
ggaagcactatgatgcttcaaacctgcatggatcacttgaatcttcatgggactggcttg
aagaatccacagcttgaatcagttgtagcttcagttttcaaatacattatggacaagcca
aatttcagtactgtgtttagtcagtctgtcaaaattactgagatcaatgaacaactccta
gagaatttatcagatgtgttaaacttatctctacctgaaagaattggcattggtcttgct
ttgtctgattcagaaaatcttgatgcattaatgtgcgggaagaacttttgtatggctcag
attgaaaggttgtgtgccaatcctgttcctatgaattctgccgagcaaattcagaatatt
atcatgttcctccagcgctcaagtgacctttccaagcatgtagattctcttatgcagata
ttatctttgctgcaatcaaaagatcatacccagttcgtcttaaatcctgttcttccagat
gaattgcatgatgctacttctctgagggatttggatttgtttcatgaatgcagagacgat
gattttgatgatattttggcagaaatggagaaggaaatgagtatgggagatgtgatgaat
gaactaggctatggatgctcagctgatgcctcgcaatgcaaagagattctctctcttttc
accccactgacggagattaccctctctcggatacttggcgctattgctcgtacccatgct
ggacttgaggacaaccagaacacattttcaacctttaccttggcccttggttgcagcacg
atgtctgatctgccacctttgagctcgtggaatgtcgatgtccttgtgaaagctatcaaa
caacttgctcctaatacaaattggataagagtggttgagaacttggattatgagggattc
tacattcctactgaggaggcattttcatttttcatgtctgtatataagtacgcttgccag
gaaccgtttcctctccatgcagtatgtggatctgtttggaagaatactgagggtcagttg
tcttttcttagatatgctgtagcttcaccgccagaagtatttacctttgcccattcagct
aggcagctgccatatgttgatgcagtgcctggccttaagcttcagtctggacaagcaaat
catgcatggctgtgtcttgatcttttagatgtgctctgccaactatctgagatgggtcat
gctagctttgctcgatcaatgcttgagtaccctcttaaacagtgtcctgaaatgttgctt
cttgggatggcacacattaatactgcttataacctgatccaatatgaagtatcttttgct
gttttcccaatgataattaaaagtacaatgagcaatggtatgattcttcacatctggcat
gtgaatcccaatattgtattgcggggattcgttgatgctcagaacatggagcctgactgc
acaatacgaatattagagatttgccaggagctgaagatcctatcatcagttctagagatg
attccttctccatttgctatcagattggctgttattgcttcacaaaaagaacttgtggat
cttgagaaatggttaagtattaatttaagtacatacaaggatgttttctttgaggagtgc
ctcaagtttgtaaaggaggttcagtttggtagatcacaggatttctctgcccaacctttc
catcattctggtgctctgttgaatctttatatggagaagattcctgttattctgaagttg
ttaaaagctcatattggtttgattacgtcaaccaagctttctgaggaaattgaaaagttt
caggcagtagtcttggattctactccaaggctgcagaatggtgaggctgcagattcatca
acttctgaaggatacgcagatgacattgaggcggaagcaaactcttacttccatcaaatg
ttttcgggtcagttgaccattgaggcaatggttcaaatgcttgcacgattcaaggaatcc
tctgtgaaaagggaacactcgatttttgagtgcatgattggcaatctatttgaggaatac
aggttcttccccaagtatcctgaaagacagctcagaattgctgctgtcctctttggttcc
ataatcaagcaccagcttgtaactcatctaacacttggcattgccctgcgtggagtttta
gatgcactgcgtaaacctgctgattcaaaaatgtttgtgtttgggaccaaggcgttggag
cagtttgtggaccgtctgattgaatggccgcaatactgcaaccacatcttacaaatttct
catctacgtagtactcatgcagagcttgttgctttcattgaacgggctcttgccaggatt
tcgtcgggccatttggaatcagatggggcaagtaatcctgctgctcatcaacatgtttct
tcgcaggctacctcaggaaatggggaggttagtggctctggcatcacacaattggggcag
caactttcttctcagatacagctccagcagagaagcgaaagtgttgttgatgaccgtcat
aaggtttctgctgcttcatctagtgatatgaaaccacttttgtcgtctattggccaacca
tcatctgttgctcccttaggtgatacttctagtgcacagaagctgcataatgcggtcagt
gctccagcaatgctgtcaatctcttccggttttgctcgtccttcccgaggagttacatct
actaaatttggctctgctttgaacatcgaaacactggttgctgccgcagagagaagagag
actcctatagaggctccagcatcagaggttcaggataagatttcatttataatcaataat
atttcggctctaaatgtagaagccaaagctaaggaattcactgaaatattgaaagagcaa
tattatccctggtttgcgcagtatatggttatgaaaagagcaagcattgagccaaatttt
cacgatttgtacttaaagtttttggataaagttaattcaaaggctttgaatagagagatc
gtccaggccacatatgaaaactgcaaggttctattaggatcagagcttattaaatcaagt
tcagaagagcgttcattgcttaaaaatttgggtagctggcttgggaagttgacaattgga
agaaatcaagttctaagggctcgtgaaatagatcccaaatcactgattatcgaggcatat
gagaagggcttgatgattgctgtcattccatttacttccaagattctggaaccatgccaa
agcagtctagcatatcaacctcccaatccctggactatggccattcttggattacttgct
gagatctattcaatgccaaacctcaaaatgaacctcaaatttgacatagaggttctattc
aagaaccttggtgtggatatgaaggacattacacccacttctcttcttaaggatcggaaa
agggaaattgaagggaatcctgatttttctaataaagatgttggagcatcacaacctcag
ctagttcctgaagttaaaccagcaatagtttctccgttaggtcacgtggatttgccgctt
gatgttgccagcccacctaactctggtggccctacgcatttattgtctcagtatgcggct
cctcttcgtctttcttctggcacattgatggaggatgaaaaactagcagctcttggcatc
tctgatcagcttccttccgcgcaaggcctatttcaagcaagtcaatcccagtcacctttc
tctgttagtcagctttcgacgcctatacctaacattggaactcatgttattatcaaccag
aaacttactgccttgggcttgcacttgcattttcagagagtggttccaattgcaatggac
agggctatcaaagagattgtttctggcattgttcaacgcagtgtttcaatagccactcaa
acaactaaagaacttgttttaaaggactatgccatggaatcagatgagacgcgtatatac
aatgctgcacatttgatggttgcaagtttggcaggaagtctggcccatgtgacatgcaag
gagcccttgcgcggttctatatcaagtcaattgaggaattcgcttcaaggtttaactatt
gcaagtgaactcctggaacaagctgtgcaacttgttaccaatgacaacctcgaccttggt
tgtgcagtgattgagcaggctgctacagataaggctattcaaaccattgatggagaaata
gctcaacaactttctttaagaagaaagcatagagagggcgtaggttcctctttctttgat
ccaaacatttatgcacaaggatctatgggtgtacctgaggccctgcgcccaaaacctggt
cacttatcagtttctcaacagcgagtttatgaggactttgttagacttccttggcagaac
caatctagccagggctcacatgccatgtctgctggttctttgacttcatcgggtgatgct
gctcaagccagtgcttatggtttagcaggaggacaaggtaaccaaggctattcatcaagt
gcaggaagcacaggatttgatgcagtttctcgcccgtcggatgttgcttctggcactact
gaatccacttcagctgggtttctgagtacatcattggtacacattggggctgctgatggt
ggtattctacataattctgaaagtgaatctgtcaacgctgcatttactccagctgctact
gagttatatgcagctgattcaactgaacctgtaaaagaacctggagcttcttctcagtca
ctaccatcaactgctgcccctgagcgcattggaagcagcatcttggaaccttcgctgcag
acaagggatgctctggataaataccacattgttgcacaaaagcttgatgctttgatagga
aatgatgctagagaagctgaggttcagggagtaatttctgaggttcctgagataatactc
agatgcatcagtcgagatgaggctgccttggctgtggctcaaaaggtcttcaagggattg
tatgagaacgcatcaaacaatcttcattttagcgctcatcttgcgattttggctgccatt
cgtgatgtttgcaagcttgttgttaaggagctcactagttgggtgatttactcagacgag
gagagaaagttcaacagagatattactatgggccttattcgtagtgaattactaaacctt
gcagagtacaacgttcacatggcaaaacttattgatgggggaaggaacaaggctgcaacc
gagtttgccatttctcttcttcaaactttggtcactgatgagtccagagtagtcatttca
gaactccacaatcttgtagatgcattagcaaagcttgctgcaaaacctggatctcctgag
tcattacaacagctgattgagattgttaggaatcctgctgccaatgctaatgcttcatct
ggtgctaccactgcaaaggatgataaggctaggcaatccaaggacaaaaaggctcatagt
cacaccacagcaaacagggaagattacaacatcccggagtctgtggatccagatcccgtt
ggtttccctgagcaggtatccatgctgtttgcagaatggtatcagatatgcgaacttcct
ggctcaaatgatgcagcttgtactcgttatgtcttgcaattacatcaaaatggtctgctt
aaaggggatgatatgacagatcggttcttccgccgcctcacggaagtttctgttgcacat
tgcctatcttcggaggtcattaatcctggtacattgcaatcacctcagcaaagtcagagc
ctatccttccttgccattgacatttatgcaaaactcatgttatcgatcctgaagtgttgt
cctgtggagcaagggtcaagtaaaatatttcttttgtcaaagattttgaccgttactgtc
aaatttattctaaaagatgcggaagaaaagaaagcttcttttaatcctaggccgtatttc
agattgtttattaactggctgttagacatgagctcactggatcctgttgctgatggttca
aactttcagatattgtcggcctttgcaaatgcattccatgttttgcaaccccttaaagta
cctgccttcagctttgcgtggcttgagttggtcagtcacaggagtttcatgcctaaatta
ctcattggaaatggtcaaaagggttggccttatatccaacgcttgcttgtgaatttgctt
caattcttggaaccatttttgaggaatgctgagctgggagtgccggttcgctttctgtat
aaaggcacacttagagtgctgctagtgctgctccatgatttcccagaattcctatgtgat
tatcattttaccttttgcgatgtgattcccccaagttgcatacaaatgcgcaatattatc
ctcagtgcttttcctcgcaatatgaggctgcctgatccatctactcccaacttaaagatt
gatctgcttccagaaatcagagacccccctcgtattttttctgaggttgatgcggctctt
agagcaaagcagatgagagctgatgtggatgattatctcaagacgggccaaccaggttcc
tcatttctgagtgaactgaagcagaaattgctccttccacccagtgaggctgcttctgct
ggtacccgttacaatgtaccactgatcaattctcttgtgctttatgtaggaatgcaggcc
atccatcaactgcaaacaagaacatctcatgcacagtcgacaggaaacaatagttcgctg
actgcattcttggtgagtgctgccttggatattttccagacattgattcaggatctggat
accgaagggcgctatcttttcctaaatgcggctgcgaatcagttgcgctatcctaacaac
catacacattatttttcctttgtcttactctatctgtatgctgaagcaaaccaggaaatt
atccaggagcaaattacaagagtactattcgaacgcctcattgtgaatcgacctcatcct
tggggtcttcttataactttcattgaactgatcaagaaccctagatacaatttctggaac
caatcattcatcaggtgtgctccggagattgagaaactctttgaatcagtcgcaagatct
tgtggaggtctcaagcctgttgatgacagtatggtctctgggtgggtgcctgacaacact
cactga
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integrated database retrieval system
