Citrus x clementina (clementine): CICLE_v10018539mg
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Entry
CICLE_v10018539mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14327
regulator of nonsense transcripts 2
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03013
Nucleocytoplasmic transport
cic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CICLE_v10018539mg
03015 mRNA surveillance pathway
CICLE_v10018539mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10018539mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CICLE_v10018539mg
mRNA cycle factors
P-body specific factors
CICLE_v10018539mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
18048668
NCBI-ProteinID:
XP_006440925
UniProt:
V4TR46
LinkDB
All DBs
Position
Unknown
AA seq
1155 aa
AA seq
DB search
MIVLSFHSVSRTRATVFICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMK
KRSTLKLLLELYFIGIIEDSSIFINIIKDLTSIEHLKDRDTTQTNLTLLASFARQGRIFL
GLPLSGPGQEIYEEFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAK
ILNAKGELSEENSSSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTSGEDAS
PASGKDSSVPEPVWDDEETRAFYECLPDLRAFVPAVLLGEAEHKANEPSVKPLEQPTDPA
SEPDQGQLAAQDTAEVSADLGASPEGKSVEKGKDKEEKEKEKAKDPDKEKGKGKDKEEKD
KEKAKDPDKEKGKEKDTERKVETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEFC
YLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLIN
KKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRF
LYRSPETSIRMANMLEILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQ
YIRKLLFSDLDKSSIEHVLRQLRKLPWSDCESYLLKCFMKVHKGKYGQIHLIASLTAGLS
RYHDEFAVAVVDEVLEEIRLGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYL
ILVFGHGTAEQDVLDPPEDCFRIRMVITLLETCGHYFDRGSSKRKLDRFLIHFQRYILSK
GGLPLDCQITKFNRYTLSFCIENNDAIVVHNIFLREDLGRGIFALRNLSVLDLFADLRPN
MTRHSSIEEVNAALTELEEHERNVSTDKTNTEKHSDTEKPSRRPTSNTISANGQSAVRGT
EENGRLHEDIGDTDSDSGSGTIDPDGHDEEDLDEGNHDEECDNEDEDDDEGGGPASDEDD
EVRFRQKAAEVDPEELANFEQELRAVVQESMEQRKQELRGRPTLNMMIPMNVFEGSSKDH
HGRTVGGESGDEALEEDIGEVKEVQVKVLVKRGNKQQTKQMYIPRDCTLVQSTKQKEAAE
LEEKQDIKRLVLEYNDREEDNNGLGTQILNNWMPSGSSRVASRGSSWEGTSRRTGGSRHG
HHYYSGGGTYHSRRK
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgattgtactaagtttccattctgtatcaagaacaagagcaactgtatttatatgctct
ttgcttcatcaacggtacaaagacttctcaccatgcctcattgatggactcttgaaagta
ttctttcctggaaaatctggagaggacttagatgctgacaggaacttgaaggccatgaag
aagcgcagcaccctgaaactccttctggaactttattttatcgggattatagaagatagc
agcatattcattaatatcatcaaggatcttactagcatagaacacttaaaggaccgagat
actacgcagacaaatttgacgcttcttgctagttttgctcgacaaggaagaatcttttta
ggactcccactgtctggacctggacaagaaatttatgaagagttttttaagggccttaat
atcacggcagatcaaaagaaaattttcaagaaggcatttcatacatattacaatgctgtc
caagaacttcttcaggcagagcatacttcactccggcaaatggaaaatgaaaatgcaaag
attttaaatgctaaaggagagctcagtgaagaaaattcatcctcatatgaaaagctacga
aaatcttatgaccatttgtaccgtaatgtctcctctttagcagaggcacttgatatgcag
cctccagtcatgccagaggatgttcacactactcgggttacctctggagaagatgcttct
cctgcatctggcaaagattcttctgtgccagaacctgtgtgggatgatgaagagactagg
gctttctatgaatgcttacctgatctcagagcatttgtgccagcagtattactgggagaa
gcagagcataaagcgaatgagccatctgtgaagccattggagcaaccaactgaccctgct
tctgaaccggaccaaggtcagttggccgcccaagatactgcagaggtttctgcagatttg
ggtgcttcgccagagggaaaatcagttgagaaaggaaaagataaagaagaaaaagagaaa
gaaaaggccaaagatccagacaaggagaaaggaaaaggaaaggataaagaagaaaaagat
aaagaaaaggctaaagatccagacaaggaaaagggaaaagaaaaggatacagaaagaaag
gtggaaactgaaaaggagaaacttaaaggtgttgaggggacaaatttggatgctctattg
cagagactcccaggctgtgtcagccgcgaccttatagatcaattgactgtggagttttgt
tatttaaattcaaagtcaaataggaaaaggctagtaagggcattgtttaacgtaccacga
acatctttggaactgctgccatactactcacgcatggttgccacactttcaacttgtatg
aaggatgtctcttccatgctgatacagatgttggaagaagagttcaacttcttgataaat
aaaaaggatcaaatgaacattgaaacaaagatcaggaatattaggtttatcggagaacta
tgcaagttcaaaattgctccagctggtcttgtttttagttgtctaaaggcttgtttggat
gatttcactcatcataacattgatgttgcatgcaatcttcttgagacgtgtggccgcttt
ctgtatcgttcccctgaaactagtatacggatggctaacatgttggagattttaatgcgc
ttgaagaatgtcaaaaatttggacccccggcatgtaactcttgtggaaaatgcttactac
ctgtgcaaacctcctgaaagatctgcacgagtatctaaagttcgtcctccattacatcag
tatatcaggaagttactattctctgatcttgataagtcttccattgagcatgtgctgagg
caactccgtaaattaccttggagtgattgtgagtcataccttttgaagtgctttatgaag
gttcataaagggaagtatggtcagattcacttgattgcttcgctcactgctggtttaagt
cgctatcatgatgagttcgctgtagctgttgttgatgaggttttggaggagattaggctt
ggtctggaattgaatgactatgggatgcagcagagacgccttgctcatatgcggtttctc
ggggagctatacaactatgaacatgtggactcatctgttatctttgatacactttatttg
attcttgtcttcggccatgggacagcagagcaagacgtactggacccaccagaagattgt
ttccggatcaggatggttattactcttcttgagacttgtggtcactactttgaccgaggc
tcttccaagaggaaacttgatcgatttttgatacacttccagaggtatattctcagcaaa
ggtggactcccactggattgccaaataactaagtttaacagatatacactgagcttttgc
attgaaaacaatgatgccattgtcgtgcataacatttttttaagagaggacctaggacgc
ggaatttttgcattgagaaatcttagtgttttggatttatttgcggacttgcgcccaaac
atgactcgacattcttccattgaggaagttaatgcagctctgacagagcttgaagagcat
gaacgtaatgtctcaacagataaaactaataccgagaagcactctgacactgaaaagcct
tctaggcgacctacttccaacaccatttcagctaatggacaaagtgcagtacgtggtact
gaggaaaatggtagactgcatgaagacattggggacactgacagcgattcaggaagtggc
acaattgacccagacgggcatgatgaagaagacttggatgaagggaatcatgatgaagaa
tgtgacaatgaggacgaggatgatgatgagggcggcggacctgcttctgatgaggacgat
gaagttcgtttcagacagaaggctgcagaggttgaccctgaggaactagcaaattttgag
caggagctccgggctgtagttcaggagagcatggagcagcgcaaacaagagctaagaggc
cggcctactttaaatatgatgatcccaatgaacgtgtttgaaggatcttcgaaggatcat
catgggaggacggttggaggggaaagtggtgatgaggcattagaggaggacattggagaa
gtcaaggaagttcaggtgaaagtccttgtgaagcgtggaaacaagcaacagacaaagcaa
atgtacattcctcgagattgcacccttgtgcaaagcacaaaacagaaagaagcagctgag
ttggaggagaaacaagatataaagaggctggtattggagtataatgatagagaagaggat
aataatgggttgggaacacagatattgaataattggatgccaagtggcagcagcagagtt
gcaagccgaggtagctcatgggaaggaaccagcaggagaactggtggatcacgccatggg
catcattattattcaggtggaggaacctaccacagcaggagaaaatga
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integrated database retrieval system
