Citrus x clementina (clementine): CICLE_v10018695mg
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Entry
CICLE_v10018695mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CICLE_v10018695mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10018695mg
03041 Spliceosome [BR:
cic03041
]
CICLE_v10018695mg
03009 Ribosome biogenesis [BR:
cic03009
]
CICLE_v10018695mg
03016 Transfer RNA biogenesis [BR:
cic03016
]
CICLE_v10018695mg
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CICLE_v10018695mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CICLE_v10018695mg
Spliceosome [BR:
cic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CICLE_v10018695mg
Complex C
U4/U6.U5 tri-SnRNP related factors
CICLE_v10018695mg
Ribosome biogenesis [BR:
cic03009
]
Eukaryotic type
Pre-60S particles
Helicases
CICLE_v10018695mg
Transfer RNA biogenesis [BR:
cic03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CICLE_v10018695mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Late_protein_L2
Motif
Other DBs
NCBI-GeneID:
18046242
NCBI-ProteinID:
XP_006443370
UniProt:
V4TXZ2
LinkDB
All DBs
Position
Unknown
AA seq
954 aa
AA seq
DB search
MEESLMAGKRKAPEEDLHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTF
ANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ
RVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQP
CHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGK
ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK
DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVK
ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICII
MVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQYE
KALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLG
SGRLIKVREGGTDWGWGVVVNVVKKPSAGVGTLPSRGGGYIVDTLLHCSPASSENGSRPK
PCPPQPGENGEMHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGL
PKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQL
KSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNG
TFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNV
DEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQVR
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatcactgatggctgggaagaggaaagcacctgaagaggatttacatgtcact
ggaaccccagaggaagaatccaccaaaaagcaacgaaatctgacacgctcatgtgtgcat
gaggttgcagtccccagtggctatgctttgactaaagatgaagcaattcatgggactttt
gctaatccggtgtataatggtgagatggcaaaaacctacagtttcgagctcgacccattt
cagcgagtgtcggttgcatgcttggagagaaatgagtcggttcttgtctcagctcataca
tcagcaggtaaaactgctgttgctgagtatgcgatagcaatggctttcagagataagcag
agggttatatacacttcacctttgaaagctttgagtaaccagaagtacagggagttacat
caagagtttaaagatgttggattgatgactggtgatgttactctctcgcctaatgctagt
tgtttggtcatgacaacagaaattctacgaggaatgctttatcgggggtcggaggtcttg
aaggaagttgcttgggttatttttgatgaaattcattacatgaaagatagagaaagaggg
gttgtttgggaggagagtattatatttttaccgccagctattaagatggtttttctttct
gcgacaatgtccaatgccacacagtttgccgagtggatttgtcatttgcacaaacagcct
tgccatgtggtgtacacagattttcgaccaacacctttacagcactatgtttttccggtg
ggtgggagtggattgtatcttgttgttgatgagaaagagcagtttagagaggataatttt
gtgaagctgcaagatactttcttaaagcagaaaataggtggcaggagagaaaatggaaaa
gcaagtgggagaatggccaaaggtgggagtggttcagggggttcagacatattcaaaatt
gtgaagatgatcatggaacgaaaatttcagccggtcattgtatttagcttcagtagaaga
gaatgcgaacaacatgctatgtctatgtctaagcttgattttaatacacaagaggaaaag
gatacagttgagcaggtttttcagaatgcagtggactgcttgaatgaggaagacagaaat
ttaccggctattgagttgatgttgcctttacttaagcgaggtattgccgttcatcattct
ggccttctgcctgtaatcaaggaattggtggagcttcttttccaggaaggtcttgtgaag
gccctcttcgccacagaaacatttgccatgggtttaaacatgcctgccaagaccgttgtg
ttcacagctgttaagaaatgggatggtgatagtcatcgttatattggttctggtgagtat
atacagatgagtggaagggctggacgccgtggcaaagatgaccgtggaatttgtataata
atggttgatgagcagatggagatgaatacgcttaaggacatggttttgggtaaaccagct
cctctagttagtactttcagactgagctactattcaattttaaatttaatgagccgtgca
gaaggccagttcactgctgaacatgtgataaagaattcatttcatcaatttcagtacgaa
aaggctttacctgatataggaaaaaaagtttcaaagctggaagaagaagctgcctcactt
gatgcctcaggagaggctgaagttgctgagtatcataagctgaaacttgacatagcccaa
cttgagaagaagttgatgtcagaaataacaaggcctgaaagagttctttattatcttggt
tccggtcggctgatcaaggtaagagaaggtggaacagattggggctggggagttgtagtc
aatgttgtcaaaaagccgtcagcaggtgtaggcaccttgccttcacgaggtggtggttat
atagtggatactttgcttcattgttcgcctgcttcaagtgaaaatggatcacggccaaag
ccatgcccacctcaacctggagaaaatggtgaaatgcacgtggtccctgttcagctgccc
ctaatttccactttaagcaaaatcagattatctgttcctcctgatctacgacctctggat
gcaaggcaaagtatacttcttgctgttcaggagctggagtctcggttccctcaaggcctg
ccaaagctcaatcccgtaaaggatatgaagatcgaagatcctgaagttgttgatttggtg
aatcaaattgaggaacttgagcacaagctgtttgctcatccactgaataagtctcaagat
gagaatcaaattagatgtttccaaaggaaagcagaggtgaatcatgagattcagcagctc
aagtcaaaaatgcgtgactcccagatccaaaaattccgggatgaacttaaaaaccgctca
cgggtcttgaaaaaacttggccatattgatgctgatggtgttgtccagttgaagggacga
gcagcttgtttgatagacacaggagatgaactccttgttactgagctcatgttcaatggt
acattcaatgatcttgatcatcaccaagttgcagctcttgcaagttgttttattccagta
gacaaatcaagtgagcaaataaatttgagaatggagcttgctaaaccattacaacaactt
caagagagtgcgagaaaaatagcagagatacaaaatgagtgcaaactggaagtaaatgtt
gatgaatacgtggagtcaactgtcaggccgtttttgatggatgtgatttactgttggtca
aagggtgcaacttttgcagaggttattcaaatgactgatatatttgagggtagtatcatt
aggagtgctagaagactcgatgagtttttgaaccaggtaagataa
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