Citrus x clementina (clementine): CICLE_v10018758mg
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Entry
CICLE_v10018758mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12855
pre-mRNA-processing factor 6
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CICLE_v10018758mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cic03041
]
CICLE_v10018758mg
Spliceosome [BR:
cic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CICLE_v10018758mg
Complex C
U5 SnRNP specific factors
CICLE_v10018758mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_19
HAT_Syf1_CNRKL1_C
TPR_8
TPR_2
TPR_17
TPR_CcmH_CycH
Wzy_C_2
Motif
Other DBs
NCBI-GeneID:
18047129
NCBI-ProteinID:
XP_006442217
UniProt:
V4TPV6
LinkDB
All DBs
Position
Unknown
AA seq
915 aa
AA seq
DB search
MLGSRGRLDFLNSKPAANYIAGAGRGASGFTTRSDIGPARTAPPSTIIGLPRPKPRDDDG
EDDNDDDGNNGYQQNFDHFEGNDAGLFANSEYDDEDKEADAVWESIDKRMESRRKSRREA
RLEEEIKNYRRKNPTIREEFVDLKGKLSTVKAKEWERILEIGDYSRSNKRKRFESFVPVP
NSLLQKARQEQQHSRVAGGAESVVTDLTAVGEGRGKILTLKLDGISDSVTGLTVVDPSGY
LTRMNDLKITTNSELRDILKARRIVRAVTENSPKKPLGWIQAARLEELAKEEAAARKLIT
KGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVL
RMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVL
NKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDIWMKEAEIA
EKAGSAIITNTIEIGVDEEDRKRTWVADAEECKKRGSIETARAIFSHACTVFFTKKSIWL
KAAQLEKTHGSRESLIAFLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI
PNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFI
EEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNG
LNGLSKARAVLSVARLKNPLNPEICLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA
ELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTG
DFWALYYKFELQQGSVENQKEVLNRCIAAEPKHGEKWQAISKAVENSHCPTEAILMKVVN
ALGEGGESGAENGRN
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgctcggcagcaggggaaggttagatttcttaaactccaagccagcggctaactatatt
gctggtgcgggccgtggagccagcggcttcactacccgctccgacattggcccggcccgc
acagccccaccttccactattattggtcttccgagaccaaaacccagagacgacgacgga
gaagatgataatgatgatgatggtaataatgggtaccaacagaatttcgatcacttcgag
ggaaacgacgccggattgtttgcgaattcggagtacgatgatgaagacaaggaagctgat
gctgtgtgggaatccatcgataaacgaatggagtcccgaagaaaaagccgaagagaggcg
aggttggaggaagagattaagaactaccgtcgtaaaaatcctacgattagagaggaattt
gtggatttgaagggaaagttaagcactgtgaaagcaaaagagtgggagcgcattcttgaa
attggagactattcgcggagcaataagagaaagagattcgagagcttcgtgccagttccg
aacagcttgttacagaaagcaagacaagaacagcaacatagcagggtcgccggtggggcc
gagtctgttgttactgacttgacggcagtcggtgaaggcagaggtaagattctaacgtta
aagttggatggtatttccgattctgtaacgggactaacagttgttgatccgagtggatac
ttgactaggatgaatgatttgaagattactactaactctgaacttcgtgatatcctgaag
gcgagaaggatagtacgggcagtcactgaaaattccccaaaaaaaccattgggttggatt
caggctgcaaggttggaggaactggcaaaggaggaagctgcagctagaaagttgataaca
aaaggttgcaatatgtgtccaaaaaatgaggatgtttggttggaagcttgcaggctcgct
aggcctgatgaagctaaaggcgttgttgctaagggtgtgagacagattccgaagtctgtt
aggttgtggttacaggctgcggaattagaccatgataaggcaaataagagtagagtgttg
cgaatggcgttggatgaaatacctgattcggttaggttgtggaaggctttagtggagata
tccagtgaggaggaagctaggatattgttacatagagcagttgagtgctgtcctttagat
gtggagttatggcttgccttggccaggctggaaacttatggtgtagccagaagcgtgctt
aataaggctaggaagaagttgcctaaagaacgggcaatatggatagcagctgctaaattg
gaggaggctaatgggaatacttctatggtagggaagattattgagaggggtataagggca
ttgcaaggagaggaggttgttattgatagggatatatggatgaaagaggctgagattgca
gagaaagcagggtctgcaatcattacaaatacaattgagattggtgttgacgaagaggat
aggaaacggacttgggtggcagatgcggaagagtgtaagaaaagggggtccattgagaca
gccagagccattttttctcatgcctgcactgtattttttactaaaaagagcatttggctt
aaggcagctcaacttgagaagacccatgggagtagagagtctcttattgcttttttgagg
aaagcagtcacttacttcccgcaagcggaggttctttggcttatgggtgcaaaagagaag
tggcttgcaggagatgtgcctgcagccagagatatccttcaagaagcatatgctactata
cctaattcagaggagatttggctagcagcttttaagcttgagtttgagaatcgtgaactt
gagagagccaggatgcttcttgctaaggcaagagatatgggaggtacagagagagtctgg
atgaaatcagcaatcgttgagagagaactgggaaacaatgcagaggagaggggtttcatc
gaggaagggttgaaacgattcccatcattttttaatctgtggttgatgctagggcagcta
gaggagcggcttggtcacttgaaagaagctaaagaagcttatcagtcaggttgtaatcag
tgtcccaattgtataccactctggtattccctagccaatttggaggagaagaggaatggg
ctgaatgggttaagtaaagctcgggcagtgcttagtgttgctaggttaaagaatccttta
aaccctgaaatctgccttgctaccattcgagctgaatcaaagcatggaaataagaaggaa
gccgatagctttatagcaaaagcattacagaagtgtcccaatagtggtatactttgggct
gaattaatcaagatggttccccatcacgatcgcaaaagtaaaggtaaggatgcccttgta
aaatctgaccgtgatccccacgtatttgctgctgtggccaagcttttttggcatgatagg
aaggttgataaagcaaggaattggttcaacaaggcagtaagcctagacccggatactggg
gatttctgggcattgtactacaagtttgagttgcagcagggcagtgtcgagaaccagaag
gaagtgctgaatagatgcattgccgcggagccaaagcatggtgagaaatggcaagcaatt
tccaaggctgtggagaactctcactgcccaactgaagcaatcttaatgaaagtggttaat
gcccttggagaaggaggagagagtggtgctgaaaatggtagaaactag
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