Citrus x clementina (clementine): CICLE_v10018788mg
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Entry
CICLE_v10018788mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CICLE_v10018788mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10018788mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CICLE_v10018788mg
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CICLE_v10018788mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
DUF4407
DUF5965
Motif
Other DBs
NCBI-GeneID:
18046925
NCBI-ProteinID:
XP_006443381
UniProt:
V4U398
LinkDB
All DBs
Position
Unknown
AA seq
645 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA
KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLEL
ILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTI
GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA
TPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPG
RRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEER
LGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTG
NSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLL
QQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNSIHQQSSQQTLMSGGQKDAGIF
FLSFHHLLYSSSSLCLKLQIDYVLSFWIHCLLDLGILETPVHMFN
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagtcgaaagcttcaaggcgagatcgatcgagtgttgaagaaagtgcaagaa
ggcgtcgacgtcttcgatagcatctggaacaaggtttatgatacagacaatgcgaaccag
aaggagaagtttgaggctgacttgaagaaggaaatcaagaagctgcagaggtaccgagac
cagatcaagacatggattcagtcaagtgagatcaaggacaagaaggctctggtggatgct
cggaagcttattgagcgtgaaatggaaagatttaagatatgtgaaaaggagactaagaca
aaagcattttctaaagaaggattgggacaacaacccaaaactgatccaaaggagaaggcc
aaatcggagacgagggattggctgaacaacttggtttcagagttggaatcccagattgat
agttttgaagcagagctggaagggctaactgtgaagaaaggaaagacaagaccaccgaga
ttgacgcatttagagacttcgattactcggcacaaggctcacattatgaagttggagttg
atcttgaggctactagacaatgatgaattgagtcctgagcaagtcaatgatgtcaaagac
ttattggaagattatgtggaacgtaatcaggatgattttgaagaatttagtgatgttgat
gagctttaccacttattacccctggacaaggtggaatctcttgaagatttggttacaatt
ggtcctcctggtcttgtcaaggctaccgtcatttccacgcatcagcaagttacctctgtc
caggagcaaggcgaagatacagcttcccaggatagcaattcagatgtagctgctagaact
cccccagcaaaaagcagtggagttggttctactgcatcaacgccagctgttggtccggca
actcctatttcgatcaatgttccagcacagactttgtccaatgcatcaaacacttcacca
gtccttccaggttcaagttctgtaagaggtgtctttgataatacaggtcccattagttcc
tcacctcctgtaaatctgacaagttctacaaaggaggaagatgttggaaacttccctggt
cgtagatcatctccatctctcacagatgtaagggtcatgggtagaggtggtctctccagc
caaccatcatctagcatccctcttagttctgccactgcagttccaagcaatggtaacctt
ggtgcagttcctttagtctcagatgtggcaaagagaaatattttgggagctgaggagaga
cttgggagtagtggcatggtacagtctctggtttccccacttagtaaccgaatgatcttg
tctcaggctgccaaaggtaatgatggaaccggatcaattgattctaataatgctggagag
actgtggctatggctggcagggtttttaccccttctatgggcatgcagtggagaactgga
aattcgttccaaaaccagaatgaaccggggcagtttcgtggaagaactgaaattgcgcct
gatcagagggagaagtttttgcaacgactccaacaagtgcagcaacaaggtcacagcaat
cttcttggcatgcctcttggaggaaataagcaattttcttcccaacagaacccacttttg
cagcagtttaattctcaaggctcatccatctctgcacaagctggtctaggacttggggtt
caggcaccaggtatgaattctgttacatctgccagcttacaacagcagccaaattctatc
caccaacaatctagtcagcagacgttgatgtcaggtggccagaaagatgctggtattttc
tttctgtcttttcatcatcttctatattcttcctccagtctttgcttaaaactacaaata
gactatgtcctttctttctggatacactgcttattggatcttggaatcttggagacacct
gtacatatgtttaactga
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