Citrus x clementina (clementine): CICLE_v10019038mg
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Entry
CICLE_v10019038mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CICLE_v10019038mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cic03041
]
CICLE_v10019038mg
03009 Ribosome biogenesis [BR:
cic03009
]
CICLE_v10019038mg
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CICLE_v10019038mg
Spliceosome [BR:
cic03041
]
Complex A
U2 snRNP components
U2 related factors
CICLE_v10019038mg
Complex B
CICLE_v10019038mg
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
CICLE_v10019038mg
Ribosome biogenesis [BR:
cic03009
]
Eukaryotic type
90S particles
Helicases
CICLE_v10019038mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ABC_tran
T2SSE
TsaE
AAA_30
AAA_7
PhoH
AAA_33
ATPase
DM9
Motif
Other DBs
NCBI-GeneID:
18050133
NCBI-ProteinID:
XP_006444546
UniProt:
V4U6J7
LinkDB
All DBs
Position
Unknown
AA seq
727 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILE
KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA
CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP
LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPL
MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKIT
KEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLT
IDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKS
FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL
DDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKA
ADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMA
RFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLDH
KPEWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAPHYYDLSNFPQCEAKRVLERLYRKREK
ERENNRK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgggaacggagaggaagcggaaggtgagcttgtttgacgtggtggacgagacctcggtc
tcagcgaagctagtcaaaacaaacggcgtcggtcccggtgcgatgatgaacaacaataac
agtttgattaataggtggaatgggaagccgtactcgcagaggtactatgagatactggag
aagcgcaagtctttgcctgtctggcagcaaaaagaggaatttttgcaagtcttgaaagcc
aatcaagttataatattggttggtgagaccggtagtggtaaaaccactcagattcctcag
tttgtactggaaggtgttgatatagaaacccctgatagacgtaggaagatgatgattgct
tgcactcagcctcgaagagtggctgctatgtctgtttctcgtcgagtggctgaagagatg
gatgtaaccattggagaagaggttggttatagcattcgttttgaagattgcagtagtgca
agaacagttttgaagtatctaacagatggtatgcttttaagagaggcaatgacagatcca
cttttggaaagatacaaggtaattgttcttgatgaggctcacgaaagaactctggccaca
gacgtgctatttggacttttgaaagaagtgttgaaaaatagaccagatctgaagttggta
gtaatgagtgcaacccttgaggctgaaaagtttcagggttatttttacggtgcgcctctc
atgaaggttccaggtaggcttcatccagtggaaattttttatacccaggaacctgagagg
gactaccttgaggcagccataaggaccgttgtgcagatacacatgtgtgaaccttctggt
gatatacttgttttcctgactggagaggaggagatagaagatgcatgccgcaaaataaca
aaggaaattactaacatgggtgaccaagtgggtcctgtaaaagtagtgcctttgtattca
acccttcctccagccatgcagcaaaaaatatttgaacctgctccacctccaagtaaggaa
ggtggcccccctggaagaaagattgtggtctctacaaacatagcagaaacttctttgacc
atagatgggatagtttatgttatagacccaggttttgctaaacaaaaagtttataatcca
cgtgtgcgtgtggaatcgttattggtttctccaatatcgaaagcaagtgcacatcagcgg
tctgggcgtgctggaagaactcagccaggaaaatgtttccgactctacactgagaaaagt
tttaataatgatctgcagccgcagacatatccagaaatattacgttcaaaccttgcaaat
acagtccttacattaaagaagctgggtattgatgatttagtgcattttgattttatggac
cctcctgctcctgagacactgatgcgagcattagaagttttgaattatttgggagcactg
gacgatgatggaaacctgactgaaatgggggagaagatgagtgaatttccactagatcct
caaatgtcgaagatgctcgttgagagtcctaaatacaactgctcaaatgaaattctttca
atttctgccatgctttcagtacccaattgctttgtccggcctagggaggctcagaaagct
gcagatgaagcaaaagccaggtttggtcacattgatggggatcaccttacactcctgaat
gtataccatgcttacaagcaaaacaatgaggatccatcttggtgttatgacaattttgtc
aatcatagggcattgaagtcggctgataatgttagacaacagctagttcggatcatggca
cggttcaacctcaagttatgcagcaatgattttaacagtcgggactactatgtcaacatc
agaaaggctatgttggcaggatatttcatgcaagtagctcacctagaacgcactggacaa
tatctgacagttaaagataaccaagttgtgcacttgcatccttcaaattgcctcgatcac
aagccagagtgggtcatttataatgagtatgtgctaactagcaggaactttattcgtacg
gtgacagatgttcgtggtgaatggttaatcgatatcgcaccacattactatgacctttcg
aacttccctcaatgtgaggctaaacgtgttcttgagaggctttacaggaagcgggaaaag
gagagggagaacaacagaaaataa
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