Citrus x clementina (clementine): CICLE_v100190881m
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Entry
CICLE_v100190881m CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03022
Basal transcription factors
cic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CICLE_v100190881m
09124 Replication and repair
03420 Nucleotide excision repair
CICLE_v100190881m
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cic03021
]
CICLE_v100190881m
03400 DNA repair and recombination proteins [BR:
cic03400
]
CICLE_v100190881m
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CICLE_v100190881m
Transcription machinery [BR:
cic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CICLE_v100190881m
DNA repair and recombination proteins [BR:
cic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CICLE_v100190881m
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_3
ResIII
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
18046183
NCBI-ProteinID:
XP_006439502
UniProt:
V4THC2
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MDHHKSHHRGDKGRPSKKPKFSNKDDHSSKFVDDDDAYYNEDAEDDYRDGEKEERKRDFS
KLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSL
YAAVSVGLETETIISVLNKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYLVESPFPE
VLKRLLQDDVISRARIVSEVENVKQRCLPNALNYPMLEEYDFRNDNVNPDLNMELKPHAQ
PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWA
FQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNRE
WGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWL
DLVKGGFIANVQCAE
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccataaaagccaccaccgcggcgacaagggccgacctagcaaaaagcctaaa
ttttctaataaggatgatcacagtagtaaatttgtggatgacgatgatgcctattacaat
gaagatgctgaggatgattatcgtgatggtgagaaagaagagagaaaacgtgattttagc
aaactagaactgaaacctgatcatgctaatcggcctctgtgggcttgtgctgatggacga
atatttcttgaaacattctctccattatacaaacaagcatatgattttctcattgctata
gctgaaccagtttgcaggccggagtctatgcatgagtataatttgactccgcattcatta
tatgcggctgtgtcagtgggactggagactgagactatcatttctgtattgaataagttg
tcgaaaacgaaattaccaaaggaaatgattgatttcattcatgcttcaacggctaattat
ggaaaagtcaagcttgtgcttaagaagaatcggtatttagttgaatcaccatttccagag
gtcttgaagaggttgcttcaagatgatgttatatctcgggcaaggattgtttctgaggtt
gagaatgtaaaacaacgttgcttgccaaatgctttaaattatccaatgttggaggagtat
gatttcagaaatgataatgtcaaccctgatcttaatatggaactgaagcctcatgctcaa
ccacgaccatatcaagaaaagagcctcagtaaaatgtttggaaatggtagggcaagatct
ggcattattgtgcttccttgtggtgctggaaagtctctagttggtgtctcggcagcatgc
cgcataaagaagagttgtctttgtttagcaacaaatgctgtttctgtggatcaatgggcc
tttcaattcaaattatggtctaccatacaagatgatcaaatttgtcgttttacttctgat
agcaaagaaagatttcgtggcaatgctggggtggttgtgacaacatataatatggttgcc
tttggtggtaaaaggtctgaagaatctgaaaagattattgaagaaattagaaatagagaa
tggggattgttgctcatggatgaggttcatgtggttcctgctcatatgtttcgtaaagtt
atcagccttactaaatcacactgcaaacttgggcttactgctacacttgtgagagaggat
gaaagaattacagatttgaatttccttattggcccaaaattgtatgaagcaaactggttg
gatctagttaaaggaggatttattgcaaatgtacagtgtgctgag
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