KEGG   Citrus x clementina (clementine): CICLE_v10021295mg
Entry
CICLE_v10021295mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K14962  COMPASS component SWD2
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CICLE_v10021295mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cic03019]
    CICLE_v10021295mg
   03036 Chromosome and associated proteins [BR:cic03036]
    CICLE_v10021295mg
Messenger RNA biogenesis [BR:cic03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     CICLE_v10021295mg
Chromosome and associated proteins [BR:cic03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     CICLE_v10021295mg
    COMPASS/SET1 complex (yeast)
     CICLE_v10021295mg
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40 WDR55 EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_Vps41 Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_SCAP KNTC1_N WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N PCYCGC
Other DBs
NCBI-GeneID: 18049784
NCBI-ProteinID: XP_006444100
UniProt: V4TZY7
LinkDB
Position
Unknown
AA seq 308 aa
MVGSQSEREDKVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGV
DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISG
SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVMFDARKYEKGPLDIFSVGGDISDA
NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG
SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAYV
GRNRGCMD
NT seq 927 nt   +upstreamnt  +downstreamnt
atggttgggtcacaatcagagagagaagacaaggtctcattggagctctctgaagaaatt
cttcagagcatggaagtgggcatttatttggtgactgctagtgatgatgaatctatacgt
ctgtatgatgtcactgctgccacatgtttgaagacaattaatagcaaaaaatatggcgtg
gatcttgtttgttttacttctcatcctacaacagtcatatactcctcaaagaatggttgg
gatgaatctctacggcttctttccttgcacgataacaagtactcgcgttacttcaaaggt
caccatgacagggttgttttacttagcctgtgctcatctaaagattgctttatctccggt
tctcttgatcgaactgttctgctctgggatcaacgggctgagaaatgccagggtcttttg
cgtgttcaaggaaggcctgctgcagcatacgatgatcaagggcttgtaatgtttgatgct
cgcaagtatgagaagggtcctttggacatcttctctgttggtggagatatatcagatgct
aatgtcgtaaagttcagcaatgatgggagacttatgcttctgaccactatggaaggacat
attcatgtgcttgactcattccgaggcacacttctatccacttataatgtgaagccagtt
tctcgcaattccacattggaggcatctttcagccctgagggaatgtttgttatatcaggt
tctggtgatggtagtgtacacgcttggagcgtaaggagtgggaaagaggttgcaagctgg
atgagttttgatacggagcctcctgtcataaaatgggcacctggaagtctcatgtttgtt
actgggtcatctgagctatcattttggattcctgatctgtctaaactgggagcttacgtt
ggaaggaaccgggggtgcatggattga

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