Citrus x clementina (clementine): CICLE_v10023841mg
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Entry
CICLE_v10023841mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CICLE_v10023841mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cic03041
]
CICLE_v10023841mg
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CICLE_v10023841mg
Spliceosome [BR:
cic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CICLE_v10023841mg
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
Helicase_C
WHD_HA2
DEAD
nSTAND3
AAA_22
T2SSE
ABC_tran
nSTAND_NTPase5
AAA_7
AAA_23
YopQ
Sigma54_activat
PhoH
Myosin_head
AAA_16
NB-ARC
TsaE
Motif
Other DBs
NCBI-GeneID:
18045781
NCBI-ProteinID:
XP_006440610
UniProt:
V4TQ70
LinkDB
All DBs
Position
Unknown
AA seq
956 aa
AA seq
DB search
MEGIRRRSRQVYLEKRKPKKLEEIRDYIEDEQFLLDGIKVTEAETRAFRYKKRIYELVNK
PPIEIDNLIEYRMPEAYDEKGCVSQKKRFAVNTQPSSNQTCDERMSQVTWEESRLRNATW
EYGSKNKRQRSHDYKFVFEDPHRQLDFIKTSIINGDKVDDSPRKLPGGYRDKPILKMLQK
ERKTLPIYNYREQVLRAVQENQVVVIVGETGSGKTTEIPQYLHEAGYTKHGKDCTSEKTV
LKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS
ATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDIL
VFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVL
ATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPG
KCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRKA
LELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNS
VFYRPKNKKFLADNARMNFYQGDAGDHIALLNVYNCWKENDYSKQWCYDNFIQFRSMKHA
RDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFFLHSQAAEKWIILDSKTSTESSCT
SEFRWLVVPEEKILIVRCCSIYRSLSITKPDCVNILDLFVHQPTFACVDARFWLSSFYDQ
GLCSINFTTTRISPRKASSPKVPAHTDSKGSASRMAYSWTSRIFLLLFPCYLALTGDTCS
QNSATKHLLIMSGLTEVFPSNTGPPVSGVGSSVGTSARRMSPQTTSTSGSSSEEGPSGSE
DTLSEDQGGDSGEGSSPGAPRPEGRSTVGGRASSRDYAIDYMTCTTTFNELDDLRL
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggagggcatcagaagacgttcaagacaagtatatttagagaaaaggaaaccaaagaaa
ctggaggaaataagagattatatagaagatgagcaatttttacttgacggtattaaggtt
actgaagctgaaactcgggcatttaggtataagaagaggatctatgaacttgttaacaag
cctccaatagaaattgataacttgattgagtacaggatgcctgaggcatatgatgagaaa
ggttgcgtgagtcagaagaaaagatttgcagtaaacacgcagccgtctagcaatcaaact
tgtgatgagagaatgagccaagtgacatgggaggagagtcgcctgagaaatgcaacgtgg
gagtatggttctaaaaataaaaggcaaagatcacatgattacaagtttgtgtttgaggat
ccccaccggcagcttgacttcatcaagacatctattatcaacggggacaaggttgatgat
tctcccagaaagttacctggcgggtatagggacaaaccaattttgaagatgcttcaaaag
gagaggaaaactttgccaatctataattatcgggagcaagtgcttcgagctgttcaggag
aatcaggtcgttgttatagttggagagacaggttcagggaagactacagagataccccag
tatcttcatgaggctggttacaccaagcatgggaaggattgcacatcagaaaagacagtt
cttaagtatatgaccgatggaatggtgttgcgtgagatgctatctgatccgaagcttgaa
agttatagtgtgctgatggtggatgaggcacatgaaagaactttgtcaacagatatttta
ctaggaatatttaaggatttggttaggttaaggtctgatcttaagttgcttatctcaagt
gcaactcttgatgcagagaagttcagtgcttattttaattttgctcccattctcagagtt
cctggaaggaggtatcctgttgaaattcattacacaaaagctccggagtcaaattatata
gatgcagcaattgtaaccacactggaaatccatgcaacacaagcatccggggacattttg
gtttttctcacaggccaggaggagattgaaactgttgaggaaatattgaaagaaagaatc
aggaaactggggacaaaaataggcgagttgattgtctgtcctgtatatgcaaacctgcca
actgagcttcaggctaagatatttgtgccaactcctgacggggctcgaaaagttgttctt
gccactaatattgctgaaacttcattgacaatagacgggattaagtatgttgtagattca
gggtattccaagatgaaatggtacaatccaaagactggaatggagtctttgcttgtctat
cctatctcgaaagcttcagccatgcagcgtgctggaaggtctggacgaacaggtccggga
aaatgttttcggttgtacactatcaacagttatcaagaggacatggaggacaatacagta
ccagaaattcaacgaactaatctcgcaaatgttattctaattctgaaaaacctaggaatt
gatgacctgttgaattttgattttctagactccccaccacaggaattattacgcaaagct
cttgaactgctgtatgctctcggtgcattaaaccaagttggtgagttaactaaggttggt
aggcagatggcagagttcccactagatcctatgctgtccaaaatgatagttgcttctgat
aagttcaagtgttcaaatgaaatcataacaattgctgctttgctttcggttggaaattca
gtcttctaccgtccaaagaacaaaaaatttctggcagacaatgcacgaatgaacttctac
cagggagatgcgggcgatcacattgctctgctaaatgtctacaattgctggaaggaaaat
gattactcgaagcaatggtgttatgataattttattcaattcaggagtatgaaacatgcc
agagacattcgagatcagctaacatgcctagttgagagggttggtattgaattaacatcc
agtctctgcaatttagaagcaatgaagaaggccataatatctggttttttccttcacagc
caggctgcagaaaaatggatcatactggacagtaaaacatccacagaaagttcatgtaca
tccgagttcaggtggctggtagtaccagaagaaaagatcttgatagttcgttgctgcagc
atctaccgttccttgagtattaccaaacctgattgtgtgaacattctggatttgtttgtc
caccaacccacatttgcttgtgttgatgcgagattctggttgtcctcgttctacgaccag
ggtctctgctcgatcaacttcaccacgaccaggatctctcctcgtaaagcttcttctcca
aaggttcctgcgcacacagacagcaagggttcggcctcgcgaatggcatattcgtggacg
agcagaatattcctgctcctgttcccttgctacctggctcttacaggagacacctgctcg
cagaattctgccaccaaacatctgctcatcatgtctggtctcaccgaagtatttccctca
aacaccggtcctccagtttctggtgttgggtctagtgtcgggactagcgctaggaggatg
tccccccaaacgacctccacgagcggaagtagtagtgaagagggaccttctggctcggaa
gacaccttaagtgaggatcaaggaggtgattctggtgaaggatcttcaccaggagcgccg
cgaccagaggggcgtagtacagtaggaggtagagcctcgtcgcgggattacgctattgat
tacatgacctgcacgaccacattcaatgagctggatgacctccggctc
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