Citrus x clementina (clementine): CICLE_v10024744mg
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Entry
CICLE_v10024744mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CICLE_v10024744mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10024744mg
03012 Translation factors [BR:
cic03012
]
CICLE_v10024744mg
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CICLE_v10024744mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
CICLE_v10024744mg
Translation factors [BR:
cic03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
CICLE_v10024744mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
T2SSE
ATPase
AAA_19
AAA_16
ABC_tran
AAA_23
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
18036974
NCBI-ProteinID:
XP_006427753
UniProt:
V4S0Y9
LinkDB
All DBs
Position
Unknown
AA seq
1146 aa
AA seq
DB search
MHRSYKLAGFLLRSIRSVSSKHSLRPSDTHRARNDPVFSLQVLLPLAPKRRGFCGYAAEQ
FSDDEYECDFEGHKASSTVANINEWKWKLGMLLRSETDQEVTSWDKRDRRDYEQISFLAK
RMGLYSQVYGKAVVVSKFPLPNYRPDLDDRRPQREVVIPLSLQRRVEGLLQEHLDRTQLS
SGKISEKSEESKPIDLAENVNMKENTDSFLDGSVMEKVLQRRSLQMRNMQRAWQESPEGN
KMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCN
IICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLS
DHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNYFGGA
PTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITA
LVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWED
ISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASIT
INDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRCV
YEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFLKRIGA
LDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQEKKN
LAEIAKSRFSAKDYSDHMALVRAYEGWKDAEREGSGYEYCWRNFLSAQTLQAIHSLRKQF
TFILRDAGLLDEDGGNNKLSHNQSLVRAVICSGLYPGITSVVHRETSMSFKTMDDGQVFL
YANSVNARYQTIPYPWLVFGEKIKVNAVFIRDSTGISDSILILFGGALSSGVQAGHLKML
QGYIDFFMDPSLAECFLKFKEELDKLIQKKLDNPSLDILKEGKYLMLAVQELVSGDLCEG
RFVFGRQSKKSKESTDNCRFTKDGTNPKSLLQTLLMRARHSPPKYKTKHLKTNEFRALVE
FKGMQFVGKPKKNKQLAERDAAVEALAWLTHTSNTNQDEEGDSPPDVTDNMLKLLGKRRK
SKRHSG
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgcacagaagttacaagctagcgggatttcttctgcggtcaatacgctcagtctccagc
aaacattcgttacgcccttccgatactcatagagctcgaaatgacccagttttcagcctt
caagtgctgcttcctcttgcaccaaaacgacgtggtttttgcgggtatgctgctgagcaa
ttctccgatgatgagtacgagtgcgactttgaaggccataaggcatcatcgacagtggcc
aacatcaatgaatggaagtggaaacttggcatgctattacgaagcgaaaccgatcaggaa
gtcacatcttgggataaaagagatagaagagactatgagcagatctcatttcttgctaaa
aggatgggactttatagtcaagtttacggaaaagcagtggttgtaagcaagtttcctctt
cccaactacaggcctgatttggatgataggcggccacaaagggaggttgttatcccccta
agcttgcagaggagagtagagggtctactgcaggaacacctggatagaactcagttaagt
tctggaaagatcagtgagaagtcagaagaatctaagcctattgatctggctgaaaatgtg
aatatgaaggagaatacagattctttccttgatggttctgtaatggagaaagttcttcag
aggaggagtttgcaaatgcgtaatatgcaaagggcttggcaggaatcacctgaaggcaat
aagatgttggacttccggaaatctcttccttcattcaaggaaaaggaaaggctgctccaa
gccatagctcggaatcaggttatagtgatatctggggaaacaggatgtggtaagaccact
caacttccgcaatacatattagagtcagaaatagaatctggtcgtggagcattttgtaac
ataatatgcacacaacctcgaagaatatctgctatggctgtttcagagagagtgtctgca
gagcgaggggagcctcttggtgaaacagttggctacaaagttcgattagagggtatgaaa
ggaaaaaatacccatctgctcttttgtaccagtggtattttacttcgacgtctgctaagt
gaccacaacttgaatggtgttacccatgtgtttgttgatgaaattcatgagcgaggcatg
aatgaagattttctgttgattgtcttgaaggatcttcttccacgtcgtcgggatttgagg
ttgattttaatgagtgccactctgaatgctgagctgttctccaattattttggcggagct
cccacgattcacattccgggcttcacatatccagttcaagcacactttctggaagatgta
ttggaaatgactggatataagttgacttctttaaaccaagttgatgactatggacaagag
aaattgtggaagacacagaggcagctgttgccacggaaaaggaaaaaccagatcactgct
cttgttgaggatgctcttcataaatctaattttgaaaattatagttccagagcacgtgat
tctctagcaagttggacagccgattgcataggatttaatcttattgaggcagttctatgc
cacatatgtcgaaaagagtgtccaggtgctgtgttagtatttatgactggttgggaggat
atcagctgtctgagggatcaacttaagtctcatccccttttgggagatcctaatcgagtt
ctgcttttaacttgtcatggttcaatgcctacatctgaacagaaattcatttttgagaaa
gcacctcctaatattcgcaaaattgttctggcaacaaatatggcagaggcaagtattaca
attaatgacatagtcttcgtggttgattgtgggaaagcgaaggagaccacttatgatgca
ttgaataacactccctgtctgctaccttcttggatatcacaggcatctgctcgacaaaga
aggggcagggctggccgagtccagcctggacaatgttaccacctataccccagatgtgtt
tatgaagcctttgctgaatatcaacttcctgaacttttgagaactcccttgaactctctc
tgcttgcaaataaagagtttgcaagttggaagcataggagaattcttgtcagcagctttg
cagccaccagaaccattggctgtccaaaatgctgtcgacttcttaaagaggattggtgca
ttggatgagaaggagaatctgacaaatcttggaaaatttttgtcgatgctgccagtagat
cccaagctagggaaaatgctagtcatgggtgctatatttcgttgctttgatccagtttta
acaatagtatctgggcttagtgttagagatcctttccttttgcctcaagaaaaaaagaat
ttggctgaaatagctaagtctagattctcagcaaaggactacagtgatcatatggctctt
gtccgtgcatatgaaggatggaaagatgctgaaagagaaggatcaggatatgagtattgc
tggaggaatttcctatctgcacaaactcttcaagccattcattctcttcgaaagcagttt
acattcattttacgagatgctggcctactagatgaagatggtggcaacaataaattaagt
cacaaccagtcactggtccgggcagtcatatgttctggcctgtatcctggcataacatct
gttgtgcatagagagacgtccatgtccttcaaaacaatggatgatggtcaagtttttcta
tatgcaaattctgtgaatgcacgttaccagacaattccttacccatggctggtctttggc
gaaaaaataaaggtcaatgcagttttcatacgtgattccactggaatatctgattccata
ctaatccttttcggtggggctctaagctctggggtacaggctggccacttgaaaatgctg
caaggttacattgattttttcatggatcctagcttggcagaatgctttttaaagtttaag
gaggaacttgataagcttattcagaaaaagcttgacaatcctagccttgacattcttaag
gaaggcaagtaccttatgcttgccgttcaagagcttgtatcaggagatttatgtgaggga
agatttgtttttggtcgtcaaagcaagaagtctaaggagtctactgataactgtagattt
acgaaagatggaacaaatcctaaaagcttgctacaaactctgttgatgagagcaaggcat
tcgcctccaaaatacaaaactaagcaccttaagacaaatgagttcagagcacttgtagaa
ttcaagggaatgcaatttgtaggcaaaccaaagaaaaacaagcagttagcagaaagggat
gctgctgttgaggcgttggcctggttaacgcacacttctaataccaatcaagatgaagaa
ggtgactcaccaccagacgtcactgataatatgctaaagcttctcgggaaacgtaggaaa
tctaaacgtcactctgggtaa
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integrated database retrieval system
