Citrus x clementina (clementine): CICLE_v10024797mg
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Entry
CICLE_v10024797mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cic
Citrus x clementina (clementine)
Pathway
cic04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
CICLE_v10024797mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cic04131
]
CICLE_v10024797mg
Membrane trafficking [BR:
cic04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
CICLE_v10024797mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
zf-HC5HC2H
AlaDh_PNT_N
TPR_MalT
zf-HC5HC2H_2
DUF2175
Motif
Other DBs
NCBI-GeneID:
18036995
NCBI-ProteinID:
XP_006425673
UniProt:
V4RVU0
LinkDB
All DBs
Position
Unknown
AA seq
971 aa
AA seq
DB search
MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLR
KESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVY
SWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMI
LNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPI
AVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVIVALENSIFGLFP
VPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAME
HFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPA
QLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHD
STRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICE
EILQKKNHYAALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKP
LCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPSDLVNSYLKQYAPSMQGRYLELMLAM
NENSISEKLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEV
LLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALVYCDRVYESIAHQPSGKS
SGNIYLTLLQIYLNPRMATKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASI
EGAEDMRMSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPR
ETKLQVKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDSQSMK
AVAKGSPLRKR
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggtacacaatgcctttgattcgctggagctaatcagcaattgctcgccaaaaatcgat
gctgtcgcatcttacggcttgaaaatcctccttggctgttccgatggctctctcaaaatc
tacagtccagggtcctcagagtccgaccgatctccaccgtccgactatcagtctctccgc
aaggaatcatacgagcttgagagaaccatttctggcttctcgaagaagcctattttgtca
atggaggtattggcctctagacagctcctcttatcgctctctgaatcgattgctttccat
aggctccccaatttggagacaatcgctgtgttaactaaagccaaaggtgctaatgtgtac
tcatgggacgatcgaagaggctttttgtgtttcgccaggcaaaagagagtctgtattttc
agacatgatggggggcgaggattcgtagaggtaaaagattttggagtaccagatactgtg
aagtctatgtcttggtgcggtgaaaatatatgtatagcaattaggaaaggatacatgata
ctgaatgcgacaaatggtgcattgtctgaggtgtttccttctgggagaattggaccgcca
ttagtggtctcgcttctttctggtgaactccttcttggaaaggagaacattggggtattt
gtggaccaaaatggtaagcttcttcaggcagacaggatttgctggtcagaggcacctatc
gctgttatcatccaaaagccttatgcaattgctttgttacctagacgtgttgaggttcga
tctcttcgagttccgtatgctttgatacagacaattgttctccaaaatgtccggcatctt
attccaagcagcaatgctgttattgttgcattagaaaattctatttttgggctcttccct
gtccctcttggcgcacagattgtacaattgacagcatctggggattttgaggaggctttg
gccttgtgcaagctgcttccaccagaagatgcaagccttcgagctgcaaaggagggatca
attcacataagatttgctcactacctttttgacaccgggagctatgaggaggccatggaa
catttcttggcatctcaagtggatattacctatgcgctttctttgtatccatctattgtg
cttcctaaaacaactgtggttcctgaaccagaaaggctgttggacatttcttctgatgct
ccaagtctctcaagaggttcttctgggatgtcagacgatatggagtcctcccctccagca
cagctatcagaattggatgaaaatgcaacacttaaatccaagaaaatgagtcataatact
ctcatggctctcattaagttcctgcaaaagaagagatccagtataattgaaaaggccact
gctgagggaacggaagaggttgttttagatgctgtgggagataactttacatctcatgat
tccaccaggtttaagaaatcaagcaaggggcgtggtaccatccccatgtactctggtgct
agggagatggcagcaatactggacacagcgctactgcaagctctgcttcttactggacag
tcttcagcggctttagaattactgaaaggtcttaactactgtgatgttaaaatatgcgag
gagattcttcagaaaaagaaccattatgctgcattgctggagctttacaagtccaatgca
aggcaccgtgaagctcttaaacttctgcatgaattagttgaagaatcaaaatcgaatcag
tcacaggacgagcatacccaaaagttcaatcctgagtcaattattgaatatctcaagcca
ctctgtgggactgaccccatgcttgttctggaattctcaatgcttgttcttgaaagctgt
ccaacgcaaaccattgagctatttttatctgggaatattccatcagacttggtcaactct
tatttgaagcagtatgctcctagcatgcaagggagatacttggagcttatgcttgccatg
aatgaaaattcaatctctgaaaagttacaaaatgaaatggtgcaaatctatctttctgaa
gtacttgattggtactcagaccttagtgctcaacagaaatgggatgagaaggcttattca
ccaacaaggaagaaattattgtctgctttggagagtatctcaggatataatcctgaggtt
ttgttgaaacgtcttccagcagatgctttatatgaagagcgtgcaatactgttgggtaaa
atgaaccaacatgagcttgccttatctttatatgttcataagctttgtgtacctgaactg
gcactagtttactgtgatcgagtgtatgagtctatagctcatcaaccatctggaaaatct
tctggcaatatttatctcacgcttctgcaaatatatctgaatccaaggatggcaaccaag
aatttcgagaagcaaattacaaatctggtatcatctcagaatacaaccataccaaaggct
gggtctgtaactgcagtcaaggttaaaggaggacgtacaaccaagaaaattgcttccata
gagggcgctgaggatatgcgaatgagtcccagcagcactgacagtggcaggagtgatggt
gatgcggaagaatttagtgaggagggagattctactatcatgattgatcaggtccttgat
ctgttgagccaaaggtgggatagaatcaatggagctcaggctctcaagctcctgccaaga
gaaactaaactacaggtgaaagatgaactctacaaccagaggaaaacagtagtgaaaatc
accagtgacagtatgtgctcgctttgcagcaagaaaataggaactagtgtttttgcagtc
tatcctaatgggaaaacgatagtgcacttcgtttgctttagagattcacaaagtatgaaa
gctgtggcaaaaggctcaccactaaggaagcgatga
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