Citrus x clementina (clementine): CICLE_v10024818mg
Help
Entry
CICLE_v10024818mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CICLE_v10024818mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10024818mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
CICLE_v10024818mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
18036512
NCBI-ProteinID:
XP_006425255
UniProt:
V4SI21
LinkDB
All DBs
Position
Unknown
AA seq
933 aa
AA seq
DB search
MLKSKSYSRKTKSNKIKKEVREVYLRDDIWCGAASCSTCDSSAARLSASTILVVDTNVVL
NQIDLLENPAIDDVVVLSVVLDEVKNKNLSVYNRIRALCSNSLRNFYVFSNTFHKDTHVD
KMDKESPNDLNDRAIRVATQWYQKHLGDATKVLLVTNDRENMRKATEQGIFAETIESYVK
SLGQPNLLDLLVHPASEDVNMEDVEDLRPSKRKVIYPEHKPMSEITSGLRRGIYHQGKLR
VNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDCDIVAVELLPQEQWHEEKSLFIAAEED
DEDEDDVHLAPSSADDAPRTASVAAAAAGENSAPSRPSGRVVGIIKRNWHSYCGSLEPMP
MPAGSGSVAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVQVI
GEIGDRDTESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSV
DPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEAAKRGTSVYLVERRID
MLPKPLTEDICSLRADVERMAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD
DSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIRE
ANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSS
KALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTS
PIRRYADVVVHRLLSASLGIYNLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTL
IYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKM
DGNLSFSVLQTVNIHMEVVEPQPNRPKLQLTLI
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgttaaagagcaaatcatacagtaggaagaccaaaagtaataaaattaaaaaggaagta
agagaagtctatctccgagatgacatttggtgcggtgctgcttcttgctcaacctgcgac
tcctccgccgctcgcttgtccgcttccacgattcttgtcgtcgacactaacgtcgtcctt
aatcagattgatttgctggagaatcccgcgattgatgacgtggtggtgctgtctgtggtg
ttggatgaagttaagaacaagaacttatcggtttacaatagaattagagctctttgcagt
aattctttgagaaatttctatgttttctcaaatacatttcacaaggatacacatgtagat
aagatggataaagaaagtcctaatgatttgaatgatagagcaattcgggtggcaactcag
tggtaccagaagcatcttggtgatgcaacaaaggttttacttgtgactaatgatagggaa
aatatgaggaaggctactgaacaaggcatattcgctgagacaattgagtcgtatgtgaag
tcattgggtcaacccaatttgcttgacctgcttgtccatcctgcatctgaagatgtaaac
atggaagatgttgaagatttgagaccctctaagaggaaagttatttatccagagcacaag
cccatgtcagagattacttctgggttgcgtcgtggaatataccatcagggaaaattgcga
gttaaccgttacaacccatttgaagcatatgttggaagtgaaagtattggtgatgaaata
atcatctatggacgtacaaacatgaatagggcttttgattgtgacatagttgctgtggaa
cttctaccccaagaacagtggcatgaagagaagtctttatttatagcagcagaggaagat
gatgaagatgaggatgatgttcatctggctccaagtagtgctgatgatgctcctagaact
gcaagtgtcgctgctgctgctgctggtgaaaattctgctccaagtcgtccgtcaggccgt
gttgtcggtattataaagcgaaactggcattcttattgtggatcattggagccaatgccc
atgcctgccggtagtggtagtgttgcccatgcattatttgtccccaaagaccgaagaatt
cctaagattcggattcaaactcgacagcttgggaatcttctggacaagagaataattgtg
gcagttgattcttgggactgccaatcacgttatccttttggccattatgtacaggtcata
ggagaaataggtgacagagatactgaaagtgagatggtcctcatagataatgatattgac
gctagaccattttccactcaagttttggcatgcttgccgccattgccatggtcggtttct
tctgaagatttggccaatcctataaggcttgatttacgagatctgcgtgtctttagtgtg
gatcctcctgggtgcaaggatattgatgatgcattacattgtacagctctttccagtgga
aattttgaagttggagttcatattgctgatgtcacaaattttgttcatcctgggactcca
cttgatgatgaggccgcaaaaaggggcacatctgtctacctcgttgagcgccgaattgac
atgcttcctaaacctctaacagaagatatatgttcactgcgggctgatgtagaaagaatg
gccttctctgttatttgggaattgacacctgaagctgaaattatttcaacaagatataca
aaaagtgttatcaaatcatgtgcagcattatcttatgttgaagcgcaggctaggatggat
gatagtcgattgatggatccgttaactacagatttgagaaatatgaattctttggcaaag
aaaatgaggcagagacgcattgaaagaggagctttaactcttgcttctgctgaagtcaaa
tttcaaattgatacagagactcatgaccctcttgatatcggaatgtaccagattcgagaa
gcaaaccaaatggttgaggagtttatgcttgcagctaatgtttcagtggcggaacaaatc
cttagacaattccctctttgttcacttttaaggcgtcatccttctccaacaaaagagatg
ctcgaacctttgctgcgtactgccgctgctgttggtctcaacttagatgtctcatcatcg
aaagcactggctgattcacttgatcgtgctgtgggtgatgatccatattttaataagctg
attcggatattggctactagatgcatgacacaggcggtttatttctgtagcggggacctc
actcctccagaatttcatcattatgggcttgcagcacctctatatactcatttcacctct
cctataagaagatatgcagatgttgttgtacacaggttgctttctgcatctttaggtatt
tacaatctcccatcagtattccaagatagaccccaacttactagcatagccgataatctg
aattatcggcacaggaatgcccagatggcaagtcggggttcagtggagcttcatactctc
atctacttcagaaaacggcccacggacacagaggctagaatagtgaagatcagatccaac
ggttttattgtctttgtgcccaagtttggcatagaaggacctgtgtacttgacaccaaga
ggtcagaagggaagcggggattggtatgtagacgagcagcagcagaagattgtaaagatg
gatggaaatctttcttttagtgttttacagactgtgaacattcacatggaggttgtggaa
cctcaaccaaaccggccgaaactccaactcaccctcatttag
DBGET
integrated database retrieval system
