Citrus x clementina (clementine): CICLE_v10027667mg
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Entry
CICLE_v10027667mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14311
nuclear pore complex protein Nup188
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CICLE_v10027667mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10027667mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
CICLE_v10027667mg
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N
Myosuppressin
Motif
Other DBs
NCBI-GeneID:
18034311
NCBI-ProteinID:
XP_006423606
UniProt:
V4SII2
LinkDB
All DBs
Position
Unknown
AA seq
1969 aa
AA seq
DB search
MASTKTVDSSLWWNPFVELLTELETASLSSDLSPKLAKKLEENRAWFVETVSRFKPPNEK
SKEALNSQIVKLGDHHQLSIKPELKEQALKISPYLCLDEVQSYILVERTQKQRNVAFDSI
VQEPIHVVLLQYYIERQCLLKCTRRILMHALYVDPSLKEGNAVGKEALKLISDGLEAKLF
SVLQALLSATHPVEMDTDLFTLWAEETLIEDSLVLDILFLLYYDSFCTCNGEKWKKLYSL
YKGISSGSYNFGKLAISTEALKSSCDAKIQLLLTLIETLDLENLLQMIHDETPSSQDAFV
FSLNDVQEMDALLSTLDVFEMKEAGLLILAWAVFLCLISSLPGKEENNVLTEIDHVGYVR
QAFEAASLNCFFDILQSDLLKETDGTAAGYRSVLRTFISAFIASYEINYQLEDGTLNLIL
DILCNIYRGEESLCIQFWDRESFVDGPIRCFLSNLGGEFPFRTLELVRFLSALCEGRWPA
ECVYNFLDKSVGISTLFEITSESLVDSTSTSQIVETRQPLHVPGVEGLLIPSKTRGQVLK
VFGGNTALVRWEYNQSAVVVLLLRLAQEQYSESSAEALFIMDLFSRMLSFNSAIRFALMD
IGNSLYAQRAALNGPMEKNMWMVEIICTLIRDLSPGSGSAAIMSRGVNILAKMLKCSPSL
VAAAALKASIFDSASRESVFDNGSNGSSSGWLLSGKLAKMLLIDCEQNDCGCPLTISVLD
FTMQLLETGVENDLVLSLVVFSLQYILVNHEYWKYKVKHVRWKVTLKVLQVIKTCIFSTL
APRKLGEVIRGMLLCDSSIHNTLFRIICMTKEALEKLYVIRTFELTEIEGLELAIGSALD
ILYSMLSKFSKEISSIPSVFYQAVLSPTTTPVPVFAAVTSLISYFRNPAIQVGATKVLSL
LLTISDYSQPYFSGNACFGFDDNQIADLRHSVESSLQSVEDEDLFVASVNLLTSAAHYQP
AFLIAFFSTMESQDVPQSNDSGMKQSANEASSGLLGSKKSRVIDAILLYIQRSDDLIKSN
PRILLNVLNFLKALWQGAGQYTNILESLKSSGKFWKHLSYSFSLITSLQSPGLEDITEVE
SHNLAYEYQCQSAILDIMAHDIFLKQRLLQAESLVKQATESNGGIENVVSAGQSKSANDW
GAEDILSSWYQSSVMCELIKSYTSCAYDNEILFHAKAAVSLLTVHMIGKLATGDSGSLSV
SLLEKVRLMSKKLTSHAAFTQLLMQYSQRRYSEGKELMILILSDLYCHLQGELEGREISP
GPFRELSQYLIESKFLQSYEHKYNADLFAASEDVYLFDPVCIKEDLGLDMWDYSEWKASK
AIADTTLHCMQEANSMVLLATSKLSALKALVTVLTVYENDSLEKRSKIGTMNPDDLTLSC
IDHICQNFHVTVELLALAPGASKDILEFLAAQAELLLHLVKSVQKRPTSPICAVLKTCGS
GLKVLSDLRSSVTMVNVTIKHLLMLLLLVMESTCLNSHRDGLKDKEFENLAEISNVTLGL
LPLLCHCIICAEHCTLSLTIVDLILRSLLTPNTWFPIIQQYLQLRHVIQKLQDKTTFASI
PIILKFFLTLARVRGGAEMLINAGFFSSLKVLFSELLDAGPSFVGNNDKIPFNLPDKTEK
LHQIWGLGMAVVAAMVHSLGDSFCTDIADNVIPYFFSEKAFLISYNLSSPDFRSDDHEKK
RARAQRTQASLTSLKETEHTLMLMCVLAKHWGSWVKAMKEMDSQLRETSIHLLAFISRGT
QHVGESASRTAPLLCPPVLKEELDWCSRPSIVNSKSGWFALTPLGSVSKAKSSSASATTA
LVARDQTIDSSLAVSQTYFSDAVAMQIYRITFLLLEFLCFQAKGAAERADEVGFVDLAHF
PELPMPEILHGLQDQAASIVIEICEANKLKQIDPEIRHICLLLLQVMEMALNLELCVLQI
CGIRPVLGRVEDFSKEVKLLIKATEGHAFLKASMKSLERITSLVYPGLL
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atggccagtactaaaaccgttgattcctctctctggtggaaccccttcgtcgaactactc
accgagctcgaaaccgcttctctctcatccgacctttctcccaaacttgcaaagaagtta
gaggaaaatcgcgcgtggtttgtcgaaacggtgtcgcgcttcaagccaccgaatgagaaa
tcgaaggaggcgttgaattcgcagatagtgaaactcggtgatcatcatcagttgtctata
aagcctgaattgaaagagcaggctttgaaaattagcccctatttatgtttagatgaggtg
caatcatacattcttgttgaaaggactcagaagcagcgcaatgtggcttttgattctatt
gttcaagagccgattcatgtggtattgcttcagtattacatagagcgacagtgcttgttg
aagtgtacaagacggattctcatgcatgctttatatgttgatcctagcttgaaagaaggg
aatgctgttgggaaggaggcattaaagctgatctcggatggactggaagccaaattgttt
tctgttctgcaggcccttctatctgctactcatcctgtagagatggatactgatcttttc
actttgtgggccgaagaaacgcttattgaagacagtttggttttggacattcttttcctt
ctttattatgattccttttgcacttgtaatggtgagaaatggaagaagctgtattctctc
tataagggaatttcatctggatcttataattttggaaagctggcaatttcaactgaggca
ctaaagtcatcttgtgatgccaaaatacagctgctgcttacacttatagaaactctggac
cttgaaaatcttcttcaaatgattcatgacgaaacaccttccagtcaggatgcttttgtc
ttttctttaaacgatgttcaagagatggacgcattattatcaactttggatgtttttgaa
atgaaagaagcaggtctgctaatccttgcctgggcagtgtttctttgcctaatttcatca
ctcccaggaaaagaagaaaataatgtgctgacagaaattgatcatgttggctatgttcgt
caagcctttgaagctgcatcattgaattgttttttcgatatccttcaaagtgatttatta
aaggaaactgatggaacagctgctggttatcgaagtgtattgaggacttttatttctgca
tttattgcatcttacgagatcaattatcagttagaggatggtaccctgaatttgatactg
gatattctctgcaacatttatcgtggagaggagtcactttgtattcagttttgggataga
gaaagttttgttgatggtcctattcgatgttttcttagcaacttaggaggtgaattcccc
ttcaggacattggaacttgttcgctttctgtcagctctctgtgaaggcagatggcctgca
gaatgtgtgtataattttttagataaatctgttggtatatctaccttatttgagattact
agtgaatccttggtagatagcactagcacctctcagattgttgaaactcgccagcccttg
cacgttcctggggtcgaaggtttgcttattcctagtaaaactcgagggcaggttttgaaa
gtatttggtggcaatactgctcttgttcgttgggagtataatcaatctgcagtggtcgta
ttgctcctgcgtttggcccaggagcaatattcagaaagcagtgcagaagctctttttatt
atggatttgtttagtcgaatgttgtcctttaactcggccatacgttttgcattgatggac
ataggcaactcattgtatgctcaaagagctgcattaaatgggccgatggagaagaatatg
tggatggttgagatcatttgcaccttgattagggatctgtctcctggttctggtagtgct
gcaataatgtccaggggtgtcaatattctagcaaagatgttaaaatgttccccttctttg
gttgcagcagcagctttaaaggcaagcatatttgattcagcttcaagggaaagtgtattt
gataacggcagtaatggttcatcaagtgggtggttgctttctggaaaactggcaaagatg
cttttgattgattgtgagcagaatgactgtggttgccctttgactatatcagtgctggac
tttactatgcagcttctggagacaggagtagagaatgatttagtcctttctttagttgtt
ttctccctccagtatattctagtaaaccatgagtactggaaatacaaggtgaagcatgtt
cgttggaaagtaacattaaaggtgcttcaagtgatcaaaacatgcatattttcaaccttg
gcccccaggaagttgggtgaggtcattcggggtatgctactctgtgattcttccatccac
aataccctctttcgaattatttgtatgactaaagaagccttggagaaactttatgtcatc
cgcacttttgaactgacggagattgaaggactggaacttgcaataggttctgctttggat
attttgtattccatgctttcaaaattttcaaaggaaatatcttccatcccttctgtcttt
taccaagctgtgctgtcacctacaacaacaccagttcctgtttttgcagctgttacgtct
ttgatatcatattttcgcaatcctgctattcaagttggtgccactaaggtactatcactg
ttgttgaccatatctgactattcacaaccatatttttctggcaatgcatgctttggtttt
gatgataatcagattgcagatttaaggcattctgttgagagcagcctacagtcagtagaa
gatgaagatctatttgttgcttcagtaaatttactcacttctgctgcacattatcagcct
gcttttctcattgctttcttttcaactatggagagtcaagatgtcccacaaagcaatgac
agtgggatgaagcagtcagcaaatgaagcttcatcagggttgcttggatccaagaaatca
agggtgatagatgcaattcttctgtatattcaaagatctgatgatcttatcaagagcaat
ccccgcatactgctgaatgtacttaacttcctaaaggccttgtggcaaggggctgggcaa
tacacaaatattttggagtcattgaagagctccggaaagttctggaagcatctgtcctac
tcattttcgttaattaccagcttgcaatctcctggacttgaagatataacagaagtggag
tctcacaatttagcatacgaatatcagtgtcaatctgctatattggacataatggcacat
gatatattcctgaagcaaaggttattacaagctgagtcacttgttaaacaagccacagaa
tcaaacggagggatagaaaatgtagtaagtgctggacagtcaaaatctgcaaatgattgg
ggtgctgaggatattttgtcaagttggtatcagagctctgtaatgtgtgagctgatcaag
tcatatacttcctgtgcgtatgataatgagatactttttcatgcaaaggctgcggtcagt
ttacttactgtgcatatgatagggaaattagcaaccggtgattcgggaagtttgtctgtt
tcattgcttgagaaggttcgccttatgtcgaaaaagttgaccagccatgctgcttttact
caattactgatgcaatactcacagcgtcgctacagtgaaggaaaagagttgatgatttta
atactcagtgatctttactgtcatcttcaaggagagcttgaaggtcgtgaaatcagtcct
gggccattcagagaactatcgcagtatctgattgaatctaagtttttgcagtcgtacgaa
cataaatacaatgctgacctatttgctgcttccgaagatgtgtacttgtttgatcctgta
tgcattaaagaagatttgggtttggacatgtgggattattcagaatggaaagcatctaaa
gcaattgctgacacaacattgcattgcatgcaagaagcaaactcaatggtgttacttgca
acttcaaagctttctgctctgaaagcattagtaactgtcctaacagtgtatgaaaatgat
tcactggagaaaaggtccaaaattggaacgatgaaccctgatgacctcactctttcatgc
attgatcacatatgccaaaatttccatgtgacggtcgaactgttagctctggctccaggt
gcctctaaagatatccttgaattccttgctgctcaggcagaactacttctccatcttgtg
aaatctgttcagaaaagaccaacttcacccatttgtgcagttttaaaaacctgtggctct
ggccttaaagtgctgagtgacttgaggtcatcagttactatggtgaatgtaacgataaag
catttgcttatgttgcttctcttggtgatggagtctacttgccttaattcacatcgagat
gggctgaaagataaggaatttgaaaacttagctgagatttccaatgtgaccttggggtta
ctacctcttctctgccattgcataatttgcgcagagcattgcactctctccctgactatt
gtggacctgatactgagaagtttgctgacacctaatacttggttccccatcatacagcaa
tatctccagctgcggcatgtcattcagaagcttcaagataaaacaacttttgcatccatt
ccaataatattgaagttctttttgacacttgcacgagttagaggaggtgctgagatgctc
attaatgctggttttttctcatcgctcaaagttttgttttccgaattattggatgctggg
ccttcctttgtaggcaataatgataagattcccttcaatctaccggataaaactgaaaag
cttcatcaaatttggggacttggcatggcagtggttgctgctatggttcattctttagga
gacagtttttgcacggatatagcagacaatgtcataccttatttcttttcagagaaagct
tttctgatttcttataatctcagttcaccagactttcggtctgatgatcatgagaagaaa
agagctcgtgcacaaaggacccaagcttctctgacttctcttaaagaaacagagcacact
ctcatgctgatgtgtgtgttagcaaaacattggggttcatgggttaaggccatgaaagaa
atggattcacaattgagagaaacaagtatccatcttttagcctttattagccgaggaact
caacatgttggagaatctgccagcaggactgcccctctcttatgtccccctgtcctcaaa
gaggagttagattggtgcagtagaccatcgatcgtcaacagcaaaagtggatggtttgcc
cttacacctcttgggagtgtgtcaaaggcgaagtcatcttctgcttcagcaacaactgct
cttgtagccagggatcaaacaatagacagtagtcttgccgtttcccaaacatacttctca
gatgctgttgcgatgcagatctatagaattacatttcttcttttagaatttctttgtttt
caagctaagggtgctgctgaaagggcagatgaagtgggatttgtcgatcttgcccatttt
cccgagcttccgatgcctgagattttacatggcctacaggatcaggcagcttctattgtt
attgaaatatgtgaggcgaataaattgaagcagattgatcctgaaatccgtcacatctgt
cttttactgcttcaagtaatggaaatggccttaaacttggaactctgtgttctacagatt
tgtggaataaggcctgttttaggacgtgtggaagatttctcgaaggaagtcaaattgctc
ataaaagcaactgaagggcatgcatttctcaaagcatcaatgaaatcattggaacgtata
acatcactcgtctatccgggattgctgtaa
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