Citrus x clementina (clementine): CICLE_v10027712mg
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Entry
CICLE_v10027712mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12120
phytochrome A
Organism
cic
Citrus x clementina (clementine)
Pathway
cic04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
CICLE_v10027712mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_4
PAS_9
HisKA
Motif
Other DBs
NCBI-GeneID:
18035337
NCBI-ProteinID:
XP_006423945
UniProt:
V4SEG2
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MSSSRPAQSSSNTGKSRHSARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQ
PRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDH
PVLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLII
DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVM
AYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKV
LQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKR
LWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDML
MRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTG
LSADSLYDAGYPGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDD
GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKL
CDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKH
FLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDN
VVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVK
LTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFAR
NGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTK
RQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLE
MVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISI
NFVPNGGQLMVSSSLTKDQLGRSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGI
SLLISRKLVKLMNGDVQYLREAGKSTFIVSVELAAAH
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgtcaagaccagcccaatcatccagcaatacagggaaatcaagacacagtgct
agagtcattgcccagactactatagatgcaaagcttcatgcagattttgagacttcgggt
acttccttcgactattcaaattcagtgcgagttagcagcacagctggtggagatcaacag
cctagatctgatagagtaaccaccgcttatcttcatcatatacagaaaggaaagctgatc
cagccatttggatgcttgctagccttagatgagaaaaccttcaaggtcattgcatacagt
gagaatgcacctgaattgttgacaatggttaatcatgcagtcccgagcgttggggatcat
ccagttcttggcattggaagtgacataaagaccatctttactgcccccagtgcctctgca
ttgcaaaaggcgctaggatttggggaagtatctcttttgaatcccattttggtccactgc
aaaacttctgggaagcccttttatgcaatcgtgcatcgtgtaacaggcagcttgatcatt
gacttcgaacctgtgaagccatatgaagtccccatgactgctgccggggctctacaatca
tacaagctcgcagccaaagcaataacccggttgcagtctttgcctagtgggagcatggag
aggctttgtgatactatgattcaggaggtgtttgaactcacaggttatgatagggtgatg
gcctataaatttcatgaggatgatcatggagaagtggtctctgagattacaaagtctggc
ctggaaccttatttaggtttgcattatccggccactgatattcctcaggctgcacgtttc
ctatttatgaagaataaagtccgtatgattgttgattgtcgtgcaagacatgtcaaagta
cttcaagatgagaaacttccctttgatctgaccttgtgtggttcaaccttaagggcccca
cacagttgccatttacagtatatggagaacatgaattccattgcttctctagtaatggca
gttgtagtgaatgacgaggaagaagagggtgacaatacactaccacagaagagaaagaga
ctttggggtttagtagtttgtcataatacaactccaaggtttgttccatttcctcttagg
tatgcatgtgagtttttggctcaagtatttgccatacatgttaataaggagttggaatta
gaatatcagatccttgagaagaacatattgcgtactcagacactcttatgcgatatgctt
atgagggatgcgcccttgggtattgtaacacagagcccaaatattatggatctcgttaaa
tgtgacggggctgctttattgtacaagaacaaaatatggagattgggagtgactccaaat
gacttccagctacatgatatagtgtcatggctttctgagtaccatatggattctacaggt
ttaagtgcggacagcttatatgatgcgggttacccgggggccctggctcttggtgatgta
gtttgcggaatggcagctgtgaggatttctcccaaggacatgattttctggttccgatcc
cagacagcttcagaggttcgatggggtggtgcaaagcatgaacctgatgagaaagatgac
ggtaggaagatgcatccaagatcatcattcaaggctttccttgaagttgtcaagacaaga
agcttaccttggaaggactatgaaatggatgcaatccattctttgcagcttatattgagg
aatgcattcaaggatgttggaactttggatttggatactaaatcaatccactcaaaactc
tgtgatctgaaaatagaaggaatgaaggaactggaagcggtgactagtgaaatggtccgc
ctcatcgaaacagctacagtaccaattttggctgttgatgtagatggtctggtcaatggg
tggaatacaaaaatcgctgagttaaccggcctttctgttgataaagcaattggaaagcat
ttcctcacactcgtggaagattcttcaattgataccgtcaaaaggatgttgtacttggca
ttgcaaggacaagaggagcagaatatccaatttgagatcaaaacacatggatctaagatt
aatgatgaccccataactttaattgtgaatgcctgtgcgagcagggaccttcatgataat
gttgttggagtatgttttgtggcccaagatatcactcctcagaagacagtcatggacaaa
ttcaccaggattgaaggtgattacaaagcgattgtacaaaacccaaacccattgatccct
cccatatttggttcagatgaatttgggtggtgctgtgagtggaatccggcaatggtaaag
ttgactgggtggaagcgagaggaagttatagacaaattacttttggcagaggttttcggg
accaacatggcatgctgtcgtctgaagaatcaagaggcttttgtaaatcttggcattgta
ctaaacaaagccatgagtggtcaggatcctgagaaggttccttttggtttctttgctcgt
aatgggaagtatgcggaatgcttgttatgtgtcaataagaaattggacagggagggagcc
gtcactggtgtgttctgtttcttgcagcttgccagtcatgagctgcaacaagcacttcat
gtccagcgattatcagagcaaactgcgctgaagagattgaaagctttagcttatactaaa
aggcagatccgaaatccactatctgggatcatattttctcggaaaatgatggaaggcact
gagctaggagcagaacagaaacggcttttgcataccagtgcacagtgccagcgtcagctt
cataagattcttgatgactcagatcttgatagtattattgatggctacttggatctagaa
atggttgagtttaccctgaatgaagtattggttgcctctatcagtcaagtgatgatgaag
agcaatgcaaagggcatccgaatagtcaatgaaacggctgaacagatcatgagtgaaacc
ttatatggagatagtattaggcttcaacaggtcttagctgatttcttgtcgatatcaatt
aatttcgtgccaaatggaggccagcttatggtttcatctagtttgaccaaagatcaattg
gggcggtctgttcatcttgcatatctggagctcaggataacacatgccggtggtgggata
cctgaaccgttgctggatcaaatgtttggaagtgagggagatacatctgaggaaggcatt
agcttgctaatcagccgaaaactggtaaaacttatgaacggagatgtacaatatctaagg
gaagcaggaaagtcgactttcatcgtatctgttgaacttgctgcagcccattag
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