Citrus x clementina (clementine): CICLE_v10027747mg
Help
Entry
CICLE_v10027747mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CICLE_v10027747mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10027747mg
03041 Spliceosome [BR:
cic03041
]
CICLE_v10027747mg
03009 Ribosome biogenesis [BR:
cic03009
]
CICLE_v10027747mg
03016 Transfer RNA biogenesis [BR:
cic03016
]
CICLE_v10027747mg
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CICLE_v10027747mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CICLE_v10027747mg
Spliceosome [BR:
cic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CICLE_v10027747mg
Complex C
U4/U6.U5 tri-SnRNP related factors
CICLE_v10027747mg
Ribosome biogenesis [BR:
cic03009
]
Eukaryotic type
Pre-60S particles
Helicases
CICLE_v10027747mg
Transfer RNA biogenesis [BR:
cic03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CICLE_v10027747mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
DUF4391
Motif
Other DBs
NCBI-GeneID:
18033670
NCBI-ProteinID:
XP_006423518
UniProt:
V4RQL0
LinkDB
All DBs
Position
Unknown
AA seq
996 aa
AA seq
DB search
MASLKRKSIMEDSYETPQPMQNSNGNGTMIVNDDEPVACLHDVSFPPGYVPSSSSTGAAA
AEADAKPAKEFPFTLDPFQSEAIKCLNNGESVMVSAHTSAGKTVVALFAIAMSLRNKQRV
IYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITRE
VAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCH
IVYTDYRPTPLQHYIFPAGGSGLYLVVDEKGKFREDSFHKALNALVPAGEGEKKRENGKR
HKGLVAGKLGEESDIFKMVKMIIQRQYDPVIIFSFSKRECEFLAMQMAKLDLTEDDEKVN
IETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVTEILFQEGLIKCL
FATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMV
DDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIP
DLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRF
VCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVV
SKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSE
FLARNASGLPLDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQ
ELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEEL
TLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQ
LECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQ
LILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgttgaagagaaagtcaataatggaagactcgtacgagactcctcaaccaatg
cagaattcgaacggcaacgggacaatgattgttaacgacgatgagccagttgcatgtcta
cacgacgtgtcgtttccccccggttacgtgccttcttcttcttcaactggagcagctgcc
gctgaagctgacgccaaacctgctaaggaattccctttcactctcgacccattccagtcc
gaagctatcaagtgcctcaacaacggcgagtccgttatggtatcggcccatacatctgct
gggaagactgtggtagcattgtttgctattgctatgtcgttgcggaataagcaacgtgtg
atatatacttcaccgattaaggcactcagcaatcagaagtacagggagtttaaagaagag
ttttcagatgtcggtttgatgactggggatgtcacaattgaccctaatgcttcttgtttg
gtgatgactactgaaatctggcgtagtatgcagtacaaaggctcagagattacgcgtgaa
gtggcttgggttatatttgatgaggtacattacatgcgtgatcgtgagagaggtgtggta
tgggaagagagcattgtgatggctccaaagaactcccgatttgtgttcctctccgctact
gtgcccaatgcaaaggagtttgctgattgggttgcaaaggttcaccagcaaccatgtcat
attgtttatactgattatcgcccaacaccccttcaacactacattttccctgctggtggt
agtggactatacttggtggtggatgaaaagggtaaatttcgtgaggacagctttcacaaa
gctttaaatgcactagttcctgctggtgagggtgaaaagaaaagagaaaatggaaaacgg
cataaaggtttggtggcaggcaaacttggagaagagagtgatattttcaagatggtgaaa
atgatcattcagcgtcaatatgatcctgtaataattttcagctttagcaaaagggaatgt
gaatttcttgcaatgcagatggcaaaattggatcttacagaagacgatgagaaagtgaac
atagagactatcttttggagtgccatggacatgctttcagatgatgacaagaagctacct
caggtttcaaatattttaccactattgaaacgtggaataggtgtgcatcattctggcttg
cttcctatattgaaggaagtgactgagatattatttcaagaaggattaattaagtgtttg
tttgccacagagaccttcagcataggtttgaacatgcctgcaaaaactgttgtgtttaca
aatgtgcgtaagtttgatggtgacaagtttagatggatatctagtggagagtacatacag
atgagtggccgtgctggtcgtcgtggcattgatgaacgcgggatatgtatcctcatggtt
gatgacaaaatggaaccttctactgctaaaatgatgcttaaaggaagtgctgacagtttg
aacagtgcctttcatctaagctacaacatgcttttgaatcaaatccgctgtgaagagggg
agtcctgaaaatttgctccgtaattcattctatcagtttcaagctgaccacgccatccct
gatcttgagaaacaagcaaaggtccttgaagaggagagggattcaatggtaattgaagag
gaagatagtttgaagaattattataatttgctacagcaatacaaaagtttgaagaaagat
gttcgtgatattgtgttctctccaaagtactgcttaccctttctgcaaccaggcaggttt
gtttgtattgaatgcaccaggggtgatgacaactctccatctttctccactgaggatcat
caggttacatggggagtggttattgaatttgagaaggtgaaaggtgtttatgaagatgat
gccaataaaaaaccagaagattccaattacacagtgaatatccttacaagatgtgtggtt
agcaaagatggagctgggaagaaaacattgaaaattgttccgttgaaggagtctggggaa
cctcttgtcgtatctgttcctatttctcagatcattaaattaagtagcgctcggttgcct
atgccaaaggatctcttgccgttgcaaactcgagagaacatgctgaagtcgacatctgaa
tttcttgctagaaatgctagcggactgcctctagatcctgaagcaaacatggggatacga
agtagttcatatcagaagctggtccgtagaatagaggctttagagagcctatttgacaag
catgaaatttcaaagtctccgcttattgagcaaaagctcaaagtgttgcacatgaagcaa
gaattgacggccaagatcaagtcaattaagagacagatgcgttcttctactgaattggca
tttaaagatgagcttaaggcaagaaaacgagttctccgaaggctaggatatgctacaagt
gatgatgttgtagaattgaaaggaaaagttgcttgtgagatcagtagtgctgaggagctc
accctaacagagctcatattcaatggagttctgaaagatgtaaaggtagaagaaatggtg
tctcttctctcttgttttgtgtggcaagagaagctccaagatgcttcaaagcccagggaa
gaacttgaattgctatttacgcaattgcaggatacagctaggagagttgccaaagttcag
ttggagtgcaaggttcaaatcgatgtggagggttttgtgaattcatttcggcctgatatc
atggaggctgtttatgcttgggcaaaaggatccaaattttatgagatcatggaaattacg
ccggtctttgagggtagcttgatcagggcaattaggagacttgaggaagttcttcaacaa
cttatactagcggcaaagtccattggggaaactgagctcgaagcaaaatttgaagaggct
gtttccaagattaaaagagacattgtgtttgcagcatcattgtatttgtag
DBGET
integrated database retrieval system
