Citrus x clementina (clementine): CICLE_v10028135mg
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Entry
CICLE_v10028135mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K10140
DNA damage-binding protein 2
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03420
Nucleotide excision repair
cic04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
CICLE_v10028135mg
09124 Replication and repair
03420 Nucleotide excision repair
CICLE_v10028135mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cic04121
]
CICLE_v10028135mg
03400 DNA repair and recombination proteins [BR:
cic03400
]
CICLE_v10028135mg
Ubiquitin system [BR:
cic04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
CICLE_v10028135mg
DNA repair and recombination proteins [BR:
cic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
CICLE_v10028135mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EIPR1
WDR55
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
EIF3I
WD40_RFWD3
WD40_MABP1-WDR62_2nd
PQQ_3
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
18033635
NCBI-ProteinID:
XP_006425057
UniProt:
V4SCP7
LinkDB
All DBs
Position
Unknown
AA seq
546 aa
AA seq
DB search
MAPQTRRMAFPRVVIDRDTDTEQSSSEDEEEDREEGPFSESEEEVTENGREEKIEEDLDA
KRKGKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCPHRVAT
EYGVTPASHRNAGNPVEYVFERQLRPNMPHMKPAHVIPDQVNCAVIRYHSRRVTCLEFHP
TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS
CTDLETGLALSLMNINPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDTRTNSR
SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVN
SAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPS
ESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG
SSRSIFIWRPKEKSELVEQKEEMKIIVCGKADKKQKHKFGDESEDSDDDTSKLKRKNVRS
KKSRKS
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggccccgcaaacgagaagaatggcgtttccgagagttgtgattgatagagacacggac
actgagcagagctcatcggaagacgaagaagaagaccgggaggagggcccattttcagaa
tcagaagaagaagtaacagagaatggacgtgaggagaaaattgaagaggatttggatgca
aagagaaaagggaaagctcctattaccatcagtcttaagaaagtttgcaaagtttgtaaa
aagccgggtcatgaagcaggatttaaaggagcaacatatatagattgtccaatgaaacct
tgctttctttgcaaaatgccaggtcacacgacgatgagttgccctcatagagttgctacc
gagtatggggtcactccagcatcccatagaaatgccggcaacccagtagaatatgtcttt
gagcgacagctcagacccaacatgcctcatatgaagcctgcacatgtgatcccagatcaa
gtaaactgtgcagtcatcagatatcatagtcgacgagtgacatgtttagagttccatcct
acaaataatcacatccttttatccggagataagaaaggacaagttggagtctgggatttt
tacaaagtatctgaaaagatagtttatggaaacatacattcctgtatagtcaataacatt
aggtttaaccctacaaatgatggtactgtttatgctgcatcctctgatggaactgtcagt
tgcacggacttggagactggcttggcgttatctttgatgaacattaaccctaatggatgg
catggcccacgtacttggaggatgctttatggcatggatatcaatccagagaaaggggtt
gtacttgttgctgataattttggttttctttacctggtggatacacgaaccaatagcaga
agtggggaggcaatcttgatccaccgaaaaggtagcaaagttgttggtctgcattgtaat
cctattcaaccagaactgcttttaagttgtggaaacgatcactttgctcgtatatgggac
atacggcgattagaagctggatcttctctctgtgaccttcctcacaaacgtgttgttaac
tcggcatatttctctccgtccggtagcaaaattcttaccacttcacaggacaaccgactt
cgtatttgggattctatctttggcaatttggactctccaagcagagaaattgtgcacagt
catgattttaatcgccatctgacaccttttcgagctgaatgggatccaaaggatccatcg
gagtcccttgcagttattggtcgttatataagtgaaaattataatggagctgctctgcat
cccatcgatttcatagatatcactacgggccaattagttgctgaggttatggatccaaat
attacaactatcagtcctgtgaacaagctacatccacgagatgatgttttggcatctggt
agttcgaggtctattttcatttggaggccaaaggagaagtcggaactggtggaacagaag
gaagaaatgaagattattgtctgtggaaaggctgataaaaagcaaaagcataagtttggg
gatgaaagtgaagattctgatgacgacacatccaagttaaagcgcaagaatgtcaggtct
aagaagtcgagaaaaagttaa
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