KEGG   Citrus x clementina (clementine): CICLE_v10028562mg
Entry
CICLE_v10028562mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K10752  histone-binding protein RBBP4
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03082  ATP-dependent chromatin remodeling
cic03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    CICLE_v10028562mg
   03083 Polycomb repressive complex
    CICLE_v10028562mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cic03036]
    CICLE_v10028562mg
Chromosome and associated proteins [BR:cic03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     CICLE_v10028562mg
  Histone modification proteins
   HAT complexes
    HATB complex
     CICLE_v10028562mg
   HDAC complexes
    Sin3A-HDAC complex
     CICLE_v10028562mg
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     CICLE_v10028562mg
    PRC2.2
     CICLE_v10028562mg
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     CICLE_v10028562mg
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    CICLE_v10028562mg
  Chromatin remodeling factors
   NuRD complex
    CICLE_v10028562mg
   NuRF complex
    CICLE_v10028562mg
   NuRF complex (fruit fly)
    CICLE_v10028562mg
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz CAF1C_H4-bd WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_EML_2 WDR55 WD40_WDHD1_1st Beta-prop_TEP1_2nd EIF3I WD_LRWD1 Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_EML MIOS_WD40 Beta-prop_HPS5 ANAPC4_WD40 WD40_RFWD3 Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_1st Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_SCAP WD40_MABP1-WDR62_1st Cytochrom_D1
Other DBs
NCBI-GeneID: 18033859
NCBI-ProteinID: XP_006422592
UniProt: V4S624
LinkDB
Position
Unknown
AA seq 406 aa
MAAEEQDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFA
VHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNR
ARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG
YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL
MIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS
HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA
KISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDDFLAATDD
NT seq 1221 nt   +upstreamnt  +downstreamnt
atggcagcagaggagcaagacgcgagcttggatcaagtggaggaggagttcacggtatgg
aagaagaacacgccgtttttgtacgatctgattgtctctcacccgttagagtggccttcg
cttaccgtccactgggtcccatcgcctccgcaaccctactcagcggaccccactttcgcg
gtgcacaagttcgtgctcgggacccacacctccgaggattttcccaactttctcatgatc
gccgatgctgtgctgcccaccaaagactcggagtctaacgtcggcggcaaaaatgaaaat
cctgtcatccccaaggtggagatagcgcagaagatacgtgttgatggggaagtgaataga
gcacggtgtatgccacagaaacccaatcttgttggtacaaagactagcagttgtgaggtg
tatgtgtttgactgtgccaaacaggcagaaaagcagcaagatgattgtgatcctgatctg
aggttgaagggtcatgataaagagggttatggattgtcttggagtccctttaaggaaggt
tatcttgtgagtggttcccatgacaataagatttgcttgtgggatgtgtctgcgttggct
caagacaaagtgattgatgcaatgcatgtctatgaggctcatgaaagtgtggttgaagat
gtgtcgtggcatttgaagaatgagaatttatttgggtctgcaggcgatgattgccaactg
atgatctgggacttgcgcactaatcaaactcaacagcgtgtaaaagctcatgagaaagag
gttaactatctatcttttaatccatacaatgaatgggttctggcgactgcatcttcagac
actactgttgctttgtttgatatgcggaagatgactgtgccgttacacattttaagtagt
cacacagaagaagtgttccaggtagaatgggatcctaatcacgaaaccgtgctggcttct
tcagctgatgacagaaggctcatggtttgggaccttaacaggattggggacgagcagttg
gaattagatgccgaggatggtcctcctgagctccttttctctcatggaggtcacaaggcc
aagatatcagatttctcttggaacaaaaatgacccgtgggtcatttcaagtgtagccgac
gacaatactgttcaggtctggcaaatgacagacagcatttaccgtgatgacgatgatttt
ctagccgccacagatgattag

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