KEGG   Citrus x clementina (clementine): CICLE_v10029160mg
Entry
CICLE_v10029160mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K12881  THO complex subunit 4
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03013  Nucleocytoplasmic transport
cic03015  mRNA surveillance pathway
cic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CICLE_v10029160mg
  09122 Translation
   03013 Nucleocytoplasmic transport
    CICLE_v10029160mg
   03015 mRNA surveillance pathway
    CICLE_v10029160mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cic03019]
    CICLE_v10029160mg
   03041 Spliceosome [BR:cic03041]
    CICLE_v10029160mg
Messenger RNA biogenesis [BR:cic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CICLE_v10029160mg
    TREX complex
     CICLE_v10029160mg
Spliceosome [BR:cic03041]
 Complex C
  Other components
   EJC/TREX
    CICLE_v10029160mg
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CICLE_v10029160mg
SSDB
Motif
Pfam: RRM_1 FoP_duplication Btz RRM_3 Kdo_hydroxy
Other DBs
NCBI-GeneID: 18034334
NCBI-ProteinID: XP_006424776
UniProt: V4SBX0
LinkDB
Position
Unknown
AA seq 247 aa
MSSALDMSLDDIIKNNKKSGSGNFRGRGRGSGPGPARRIPNRGANRVAPYTTAKAPETTW
QHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHY
DRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG
NSNGVPRGGQGRGGAFRRLRGGGGGGGRGFGRGRGRGRERNEKISAEDLDADLDKYYSEA
SEAMQTN
NT seq 744 nt   +upstreamnt  +downstreamnt
atgtcaagcgctttagatatgtctcttgacgatatcatcaagaacaacaaaaagtctgga
tctggcaacttccggggccggggtcgaggatccggacccggccctgctcgtcgcatcccc
aatcgtggtgcaaaccgtgtggcgccgtataccaccgccaaagcgccggagacgacgtgg
cagcacgatatgtttgcagatcaggtgagtgctttcccggtacagcaggcggggcgggct
tcagctatagagactggaacgaagctgtacatatcaaatctggattacggtgtctctaat
gaagacatcaaggaactgttttctgaagttggtgacttgaagcggtactcaatccattat
gatagaagtgggagatcaaagggaacggcagaggttgtctattcacgacgagcagatgct
gtggctgcagtcaagagatacaacaatgtgcagcttgatgggaagccgatgaaaattgag
attgtgggaacaaacattgcaacccgtactgcagctccagctgctaatgtcaactttgga
aattcaaatggtgttcctagaggtggacaaggaagaggtggtgcattcagaaggcttcgt
ggaggtgggggtggcggcggccgtggatttggaagaggtcgtggacgtggaagagaacgt
aatgagaagatatctgctgaagatcttgatgctgatttggacaagtattattcagaagca
tcagaggcaatgcagacaaattga

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