Citrus x clementina (clementine): CICLE_v10030845mg
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Entry
CICLE_v10030845mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CICLE_v10030845mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cic03041
]
CICLE_v10030845mg
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CICLE_v10030845mg
Spliceosome [BR:
cic03041
]
Complex C
Other components
Step II factors
CICLE_v10030845mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
AAA_22
HA2_C
DEAD
AAA_19
AAA_30
ABC_tran
AAA_16
nSTAND3
SLFN-g3_helicase
ATPase_2
T2SSE
NPHP3_N
NB-ARC
AAA_29
FtsK_SpoIIIE
nSTAND1
DAP3
PhoH
Helicase_RecD
AAA_23
AAA_33
MMR_HSR1
Flavi_DEAD
NACHT
Motif
Other DBs
NCBI-GeneID:
18044621
NCBI-ProteinID:
XP_006438086
UniProt:
V4VFQ1
LinkDB
All DBs
Position
Unknown
AA seq
704 aa
AA seq
DB search
MANLPILQYEEKIVETVKQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV
AAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSV
IILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGK
LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIQSL
DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY
VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPE
IQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIG
RTMAELPLEPSLSRMLMEANEYGCLSQALTVAAMLSAETTLLPGRSKSTEKKRKHTPLEL
PDGSGWGDHIQLLQIYECWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKGS
LDVRANHRWKESRQDYRKLRKALCVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELK
TDEEGLLPNYVVYHELIATSRPYMRNVCAVEMQWVMPILKKLEKIDINKLSGGAGQMEEA
SEKKLTDMPETEVNAAVVANDHKSRIQAARERFLARKPNKLSKI
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcttccgattctccaatatgaagaaaagatagtagaaacggtgaagcagaat
ccagtggtggtggttatcggagagacggggtccggcaagagcacgcagctctctcagata
ctccaccgacatggctacaccaaatccggaattattggcgttactcagcctcgccgagtc
gctgccgtatccgttgccagacgagttgcacaggaacttggtgttcggcttggggaggaa
gtaggttatgcaatacgatttgaggatagaacatcggaaagaacacttattaaatacctt
actgatggagttcttcttcgagaaattctgtctaatccagatcttagtccgtattcagtt
atcatattagatgaagcccatgagaggagtctcaacacggacatattgctgggtcttgtg
aaacgcttggttaatttgcgagcatcaaaattaaagattttgatcacgtcagcaactctt
gatggtgaaaaagtttccaagttcttttcaaattgccccacattgaatgtccctggaaag
ttgtatcctgtggagatattgcacagcaaggagcgtcctacaagctatcttgagtctgct
ttgaaaacagcaattgatatacatgttcgagaaccagaaggtgacgtgttgatattcatg
actggacaggatgatatagagaagctagtttcaaagttagaagataaaattcaaagcctg
gatgaagggtcctgcatggatgctgtaatccttccccttcatggttccttgccacccgaa
atgcaggtgcgtgtatttagtcctccacctccaaattgtaggcgatttattgtttccaca
aacatcgctgaaacttccttgaccgttgatggtgtagtgtatgttattgattgtggttac
gtgaagcagcggcaatacaacccatcgtcaggcatgtattcccttgatgtagttcaaatt
agcaaagtgcaagctaatcagcgtgttggacgagctggaaggacgcgccctggaaagtgc
taccggttgtacccatccactgtttaccacgatgaatttcttgatgtaacagtacctgaa
atacagcgatcttctctcgctggcagtgttctttatctgaaatcattggacctctctgat
attaatgttctcaagtttgattttctcgatcccccttcctctgagtcgttagaagatgca
ctaaagcaattatatctgattgatgctattgatgaaaatggatccattacaagtattgga
agaacaatggctgagcttccattagaaccttcactttcacggatgttaatggaggcaaat
gagtatggttgcttatctcaggctttgactgtagctgccatgttatcagcagagaccaca
ttgcttcctggtcgaagcaagagtactgagaaaaagcggaagcacactcccttggaactt
cctgatggttctggttggggtgatcacattcagttgctacagatttacgagtgttgggat
gaatgtgattatgatgtcaattgggtcaaggataatggcctgcaggtgcgaggaatgatg
tttgtcaaagacattcggaaacagctatgtcagataatgcagaaaatagctaagggatca
ttagatgtacgagccaatcatagatggaaagaaagccgacaggattataggaaattgagg
aaggctttatgtgtaggatatgcaaaccagcttgctgaaagaatgattcatcacaacggc
tatcgaactctaggttttaagcctcaactggttcaggtacacccatcatctgagcttaaa
acagatgaagaaggactgctcccgaattatgttgtttaccatgagctcattgctacctct
cgtccatatatgcgcaatgtgtgtgctgtggagatgcaatgggtcatgcccattttaaag
aagcttgaaaaaatagatattaacaaactgagcggtggagctggtcagatggaagaggca
tctgagaaaaaactcacagatatgccagaaacagaggtcaatgctgctgtggttgctaat
gatcacaaaagtagaattcaggcagccagggagcgttttcttgctcgaaaaccaaataaa
ttaagtaaaatataa
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