KEGG   Citrus x clementina (clementine): CICLE_v10031042mg
Entry
CICLE_v10031042mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K12816  pre-mRNA-processing factor 17
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CICLE_v10031042mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cic03041]
    CICLE_v10031042mg
Spliceosome [BR:cic03041]
 Complex C
  Other components
   Step II factors
    CICLE_v10031042mg
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WDR55 Beta-prop_EML_2 WD40_WDHD1_1st EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_SPT8 Beta-prop_EIPR1 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_DCAF4 WD40_MABP1-WDR62_1st eIF2A WD_LRWD1 Beta-prop_IFT140_1st Beta-prop_NWD2_C Beta-prop_Vps41 Beta-prop_WDR75_2nd
Other DBs
NCBI-GeneID: 18043790
NCBI-ProteinID: XP_006438397
UniProt: V4SUW2
LinkDB
Position
Unknown
AA seq 587 aa
MDLLQNYADEKEDELDKPENQNDQNPDSAALESSPPRILPSKSAAPQVDDTTLALTVAQA
RQTQSRPIDPSQHVVAYNPTYEQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIDSF
VFDEQYNTFYKYGYAADPAGSNYIGDLDALEKNNAISVYNIRQNEQKKRKLERKQEAEGG
DGMAVDVDPAEVNNPATDSWLMKNRKSPWAGKKEGVQTELTEEQKKYAEEYAKKKEDKGN
AGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVS
AIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY
DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ
EYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN
TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC
WFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq 1764 nt   +upstreamnt  +downstreamnt
atggatcttctccagaactatgctgacgaaaaagaagatgagctagataagccggaaaac
caaaatgaccaaaatcctgattctgcagcactggaatcatcaccaccacgtatactccca
tccaaatctgctgcgcctcaagttgatgataccacgctggctctaactgttgcccaagcc
cgccaaacccaatccaggcccattgaccccagtcaacatgttgttgcctacaaccccaca
tacgaacagctgtgggcccctatatacggtccagcccatccttatgccaaggatggcatc
gcccagggcatgcgcaaccacaagcttggttttgtagaggatgcctctattgattcgttt
gttttcgatgaacaatacaacaccttctacaaatacggctatgctgctgaccccgctgga
agcaattacattggtgatttggatgctttggagaaaaataatgccatctcggtgtacaat
atacgtcaaaatgagcaaaaaaagagaaagttggagaggaaacaggaagctgagggtggt
gatggtatggctgttgatgtggatcctgcggaggttaataatcctgcaactgactcttgg
ctgatgaagaatcggaagagcccatgggcaggtaaaaaggagggagtacaaacagagttg
actgaagaacaaaagaagtatgcagaggagtatgcaaagaagaaagaagataaaggtaat
gcaggcggtgagaaaggtgagcatgtggaggataagagtacttttcatggcaaagaagag
aaggattatcagggtaggtcctgggttgctcctcccaaagatgctaaagcagccaatgat
cattgttatattccaaagaggttggttcacacttggagtgggcataccaagggtgtttca
gcaattcgattcttccccaaatatggacatttgattctctctgcagggatggatactaag
gtgaagatttgggatgtgttcaattcaggcaagtgcatgaggacttacatgggtcattca
aaggctgttcgtgatatttcattttgcaatgatgggactaaatttttgacggccagctat
gataagaacatcaagtactgggatacagaaactgggcaagttataaggactttctcgacc
gggaagattccatacgtagttaagcttaatccggatgatgataagcagaatattttgttg
gcaggtatgagtgataagaagattgttcagtgggatatgaacacaaaagaaattactcaa
gagtatgatcaacacttgggagcagtgaatactattacatttgtggacaataacaggaga
tttgttacttcaagtgatgacaagtctctccgcgtatgggaatttgggattccagtggtt
ataaagtatattagtgagcctcacatgcactcaatgccatcaatttcgcttcatcccaat
accaattggttagctgcgcagagtttggataatcagattcttatttatagcacaagggag
aggttccagctgaataagaaaaagaggtttgctgggcacattgtggctggatatgcttgt
caagtcaatttctctccggatggacggtttgttatgtcgggagatggtgagggtaagtgc
tggttttgggactggaagagctgcaaagtgttcaggaccctcaagtgtcatgaaggggtt
tgcattgggtgtgagtggcatccactggaacaaagtaaagttgcaacatgtggttgggat
ggcttgattaagtactgggactag

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