Citrus x clementina (clementine): CICLE_v10031706mg
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Entry
CICLE_v10031706mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03013
Nucleocytoplasmic transport
cic03015
mRNA surveillance pathway
cic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CICLE_v10031706mg
09122 Translation
03013 Nucleocytoplasmic transport
CICLE_v10031706mg
03015 mRNA surveillance pathway
CICLE_v10031706mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10031706mg
03041 Spliceosome [BR:
cic03041
]
CICLE_v10031706mg
03009 Ribosome biogenesis [BR:
cic03009
]
CICLE_v10031706mg
03012 Translation factors [BR:
cic03012
]
CICLE_v10031706mg
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CICLE_v10031706mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CICLE_v10031706mg
mRNA cycle factors
Stress granule specific factors
CICLE_v10031706mg
Spliceosome [BR:
cic03041
]
Complex C
Other components
EJC/TREX
CICLE_v10031706mg
Ribosome biogenesis [BR:
cic03009
]
Eukaryotic type
90S particles
Helicases
CICLE_v10031706mg
Translation factors [BR:
cic03012
]
Eukaryotic type
Initiation factors
eIF-4
CICLE_v10031706mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18044801
NCBI-ProteinID:
XP_006437521
UniProt:
V4TLT4
LinkDB
All DBs
Position
Unknown
AA seq
406 aa
AA seq
DB search
MAAATAMRRRGGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQ
QRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKV
ILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV
LDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVS
SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI
GRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgacggctatgcggaggagaggagggggcggcggaatggatgacgacaag
atggtgttcgaaacaacggaaggagtggaggcaatcacgagcttcgacgcaatgggaata
aaagacgatctgttgcgtggaatttatcagtacggattcgagaagccatcggccatacaa
cagagggccgttatgccgataataaagggccgtgatgtaattgcacaggcccagtctggt
actggcaagacctctatgattgccctaactgtttgccagacggtcgatacttctagcaga
gaggtgcaggcgttgattttgtcacctacgagggagctggcgacgcagacagagaaagtg
attttggcaattggtgattttattaacatacaagcacatgcgtgtgttggaggcaaaagt
gtcggggaggatattaggaagttagagcatggagttcatgtggtgtctggaactccgggt
agagtctgtgatatgattaagaggaaaactttgcgtactagagctattaaattattggtg
cttgatgagtctgatgagatgctgagcagagggttcaaggatcaaatttatgatgtgtac
cgttatcttccaccggatcttcaggttgttttgatatctgccacccttcctcacgaaata
ttggagatgacgaccaaattcatgacagatcctgtaaagattcttgtgaagcgtgatgag
ttgactttggagggaatcaagcaattttttgttgcagtggaaagagaggagtggaagttt
gatacactctgtgatctttatgatacccttacgattacacaagctgttattttttgcaac
acgaagcgtaaggtggattggctaacagagaagatgcgcggctataactttactgtctca
tcaatgcatggagacatgcctcagaaggaaagagatgcaattatgggagaatttcggtct
gggacaacccgtgtgctcatcacaactgatgtttgggcacgaggacttgatgttcagcag
gtttctttggtgataaattatgaccttcctaacaatcgtgagctttatattcaccggatt
ggtcgttctggacgttttggacgcaagggtgtagcaataaattttgtcaaaaacgatgat
atcaagattcttagagatatcgagcaatattacagtacccagattgatgaaatgccgatg
aatgttgctgatctgatataa
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