Citrus x clementina (clementine): CICLE_v10033061mg
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Entry
CICLE_v10033061mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03018
RNA degradation
cic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CICLE_v10033061mg
09123 Folding, sorting and degradation
03018 RNA degradation
CICLE_v10033061mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10033061mg
03041 Spliceosome [BR:
cic03041
]
CICLE_v10033061mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CICLE_v10033061mg
mRNA degradation factors
5'-3' decay
Lsm complex
CICLE_v10033061mg
Spliceosome [BR:
cic03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CICLE_v10033061mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
18045539
NCBI-ProteinID:
XP_006438984
UniProt:
V4VHZ7
LinkDB
All DBs
Position
Unknown
AA seq
131 aa
AA seq
DB search
MQAFVEINAVSFFIVCRSARVSFNLGFLKSLKMSGRKETVLDLAKFVDKGVQVKLTGGRQ
VTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDE
IANPFMQPDGA
NT seq
396 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgtttgtggagattaatgccgtgagttttttcattgtttgtcggtctgcgcgc
gtttctttcaatttagggttcttgaaatcactcaagatgtcaggaagaaaagaaacagtt
ctggatttggcaaagtttgtagacaaaggtgttcaagtgaagctcactggtggtagacaa
gtgaccgggactctaaaagggtatgatcagttgctaaatcttgtcctggatgaagctgta
gagtttctaagagatgctgatgatccattgaagactactgatcagaccaggcaacttggc
ctaatagtgtgtaggggaactgctgtgatgcttgtgtcaccaactgatggtacagatgag
attgccaaccctttcatgcagccagatggagcctga
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