Citrus x clementina (clementine): CICLE_v10033885mg
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Entry
CICLE_v10033885mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CICLE_v10033885mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10033885mg
03012 Translation factors [BR:
cic03012
]
CICLE_v10033885mg
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CICLE_v10033885mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
CICLE_v10033885mg
Translation factors [BR:
cic03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
CICLE_v10033885mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_C
Ank_2
ATPase
Ank_5
AAA_22
nSTAND3
AAA_19
HA2_N
ResIII
AAA_7
NPHP3_N
ABC_tran
Rad17
AAA_16
Beta-prop_SPT8
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
18044401
NCBI-ProteinID:
XP_006437089
UniProt:
V4VD73
LinkDB
All DBs
Position
Unknown
AA seq
1197 aa
AA seq
DB search
MGKKKQKKAEQQQQKQQQQQSPTVAEATRIRISQILDGFLASKDEVYTFDANLSNRERAV
VHEVCKKMGMTSKSSGRGKQRRVSVCKSKKRVETDKGKEILPSLTFSEGSKLVLQDLFTH
YPPDDGEPGEKLDANQSRKSDKTRGKRDDIFCKPKMSKAEIAMKVESLTSRIEKDANLRQ
IVEGRSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVC
TQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGV
SRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLD
ADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEE
NKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGQVGDVCM
LLSLGADCQLKARDGRTALQLAEQENQAEVAQIIKKHMENALSDSMKQQLLDKYLATVNP
ELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTWDRLLANPFFRDTSKFVIIPIHS
MVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTL
QSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL
DPNCNIEDFLQKTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKM
LFFAILMDCLDPALTLACASDYRDPFTLPISPNEKKRATAAKFELASLYGGQSDQLAVIA
AFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPEDVSSCSHNAH
VPGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPL
MVYDEITRGDGGMHVRNCTVVGPLPLLLLATEIAVAPAPDNEDDDEDDDMSDDDADENES
DEECMEIDDKTSEQHGENVMSSPDKSVTVLVDRWLYFGSTALDIAQIYCLRERLSAAILF
KVTHPQKALPPVLEASMYAMASILSYDGFSGISLPAESVESLTSMIQATEIDKCPAARNR
GTGQNPSNFLMSLMSPNTRQYFPLRDHKSRIPAHKGSTKGNQLSTQVAQPPLFHGSP
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaagaaacagaagaaagctgaacaacaacaacagaaacaacaacaacagcaa
agccctactgttgctgaagctacaaggattcgaatatcccaaattctcgatggatttctt
gcttccaaagatgaagtgtacacgtttgatgctaacttatcaaatcgcgagcgggctgtg
gtgcatgaagtttgcaagaaaatgggcatgacctctaaaagttccgggcgtgggaagcaa
cggcgtgtttctgtttgcaaaagtaagaaaagggtggagacagataaagggaaggaaatt
ctcccatcattgactttttcagaggggtcaaaactggttttgcaggacttgtttacgcac
tacccacctgatgatggggagcctggtgagaaattggatgcaaatcaaagtcggaagtct
gataaaacgagagggaaaagagatgatattttctgcaagcctaaaatgagcaaggcagaa
attgcaatgaaggtggaatcacttacttctaggatagagaaggacgcaaacttgagacag
attgttgaagggaggtcaaaacttccaatctcttccttcaaggatgtcattacttccaca
gttgattcaaaccaggttgtcctcatttctggtgagacaggttgtggaaagacaacacag
gtccctcaatttcttttggagcatatttggagtaagggtgagacatgtaaaatagtatgt
actcaacctagacgtatctctgcaacttcagttgctgagagaatatctgttgaaagagga
gaaaatatcggagataatattgggtacaagattcggctggaaagtaaaggtgggaagcac
tcgtcaattgtgttctgcacaaatggggttcttttgagattgctggtctcccaaggtgtt
agcaggttgaaggaagcatctaataagccggcaaaggatgatgtttctgcactaactcac
attattgtggatgaaattcatgaaagagatcgctactctgatttcatgttggccattatc
agagacatgctcccctcatatcctcatcttcggctgatattaatgagtgctactctggat
gctgatagattttctcaatattttggtggatgcccagtcattcaagtccccgggttcact
tatcctgtcaaatctttctatttggaggatgtactttccatcctgaaatctgcagagagt
aatcaccttgattctgctagcttaattgtcccaaatgaggaccccgaattaacggaggaa
aataagagtactttagatgaagctatcagtttagcttggtcaaatgatgagtttgatatg
ctcctagaattggtttctttggaaggatccccaaatgtttacaactaccagcatactttg
acagggctaacaccattaatggtgcttgctggaaagggccaagtaggtgatgtttgcatg
ctcctctctcttggtgcagactgccagctaaaggccagagatggaagaacagcattacag
ttggctgaacaagaaaatcaggcagaagttgctcaaattattaaaaaacacatggaaaat
gcactatctgactccatgaaacaacaattacttgataaatatctagcaacagttaaccct
gaacttattgatcttgttcttatagagcagttacttagaaaaatatgcatggattcggaa
gatggagctatccttgtttttcttccaggatgggaagatataaataaaacctgggataga
ttgcttgctaacccctttttcagagatacttccaagtttgttataatacctattcattct
atggttccctctgtgcagcaaaagaaggtgtttaaacgcccaccgcctggttgtcggaaa
attattctttcaaccaatattgcggaaactgccatcaccattgatgatgttgtctatgtt
atagacagtggtcgaatgaaagaaaaaagttatgatccttacaacaatgtatcaactctt
caatcttcctgggtgtcaaaagcaagtgcaaaacagagggcaggacgtgcaggccgctgt
caggctggaatctgttatcatctttattctcaacttcgagcagcttctttgcctgatttc
caggtcccagaaattaagagaattccaattgaggaactctgtttacaggtgaagttgctt
gatccaaattgtaatattgaagatttcttgcagaagacattagaccctccagtttctgta
actattcgtaatgcaatcattgtccttcaggatattggggctttgtcacttgatgaaaaa
gttaccgaacttggggagaagctaggttgtctttctgttcatccattgatgagcaagatg
cttttctttgccatactgatggactgtttagaccctgctttgacactggcctgtgcttct
gactatagggacccattcacccttcccatatcaccaaatgaaaagaagagagctactgct
gctaaatttgagcttgcttcattgtacggtgggcagagtgatcagctcgcagtcatagca
gcttttgagtgctggaagaatgcaaaacagaggggtcaagaagcatggttttgttctcag
tactttgtctcctcaggtgtcatgaatatgctgcttggtatgcgtaagcagctccagaca
gagctaattaagaatgggtttattccagaagatgtctcgagttgtagtcataatgcacat
gtaccaggtataattcatgcagtcctcatggctggtttatatccaatggtagcgaggttg
cgtccacctcataaaaatggaagacgatttgtagagactgcaggtggtgctaaagttaga
ttgcacccccattctcttaatttcaaattatcatttaaaaaaactgatgattgcccacta
atggtatatgatgagataacccgtggggatgggggtatgcatgtaaggaattgtactgtt
gttgggccactgccattgttactccttgcaacagagattgctgttgctccagcacctgat
aatgaagatgatgatgaagatgatgacatgagtgatgacgatgctgatgaaaatgaaagc
gatgaggagtgtatggagatagatgacaagacaagtgaacaacatggagagaatgttatg
tcatctcctgataaatcggttacagttttggtggaccgatggctttattttggatcaaca
gcccttgatattgcccaaatctactgtttaagagagagattatccgctgcaatcttattc
aaagtaacacacccccagaaagctcttcctccagttcttgaggcctccatgtacgcaatg
gcctccattctatcatacgatgggttctctgggatctcactgcctgcagaatccgtggaa
tctttgacttcgatgatacaagcaactgagattgataagtgcccagcagcgagaaataga
ggtacaggtcagaatccaagtaacttccttatgtcactcatgagtcccaatacccggcaa
tactttcctcttcgtgatcataaaagtaggatacctgcacacaagggatcaacaaaggga
aatcagttatcaacccaagtggctcagccaccgctattccatggctccccg
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integrated database retrieval system
