Celeribacter indicus: P73_0053
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Entry
P73_0053 CDS
T03575
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cid
Celeribacter indicus
Pathway
cid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P73_0053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cid03019
]
P73_0053
03016 Transfer RNA biogenesis [BR:
cid03016
]
P73_0053
Enzymes [BR:
cid01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
P73_0053
Messenger RNA biogenesis [BR:
cid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P73_0053
Transfer RNA biogenesis [BR:
cid03016
]
Prokaryotic type
tRNA degradation factors
P73_0053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
AJE44768
UniProt:
A0A0B5DM89
LinkDB
All DBs
Position
53530..55785
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AA seq
751 aa
AA seq
DB search
MSSIPTRDEILRWISDHPTQTAKRDIAKAFGIKGAARIDLKRVLKELEDEGHLQKRRKTY
RDREKLPPVSVLSVLAPDASGDLFAKPLEWAGEGPEPRILLMLRESDPAVGEGERILAKL
QEVTDEDHQYQARLIRKIGSNPRKILGVFRKSAEGGRVVPIDKGNDKDWLVRAGQEQGAK
DGELVEAEQAGPKNRLGLPQARVITRLGDPSEPRAVSLIAIHQHGIPDDFPDAVIAEADA
RKPAGLKGREDLRDLPLVTIDPADARDHDDAVWAEYDPDPKNEGGFVLWVAIADVAYYVT
PGSTLDREAWKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRACLAVRMVIDAEGRKLS
HRFMRGLMRSAATLSYAEVQAARDGQPNDRCAPLMESVITPLYGAYEALARARKARQPLD
LDLPERKIVLGEDGRVKSVALAERLDAHRLIEEFMVLANVAAAEELFHRNRPLLYRVHEE
PSLEKLDALREVAQASGFTLAKGQVIHTSHLNKLLAQAEGTDHDELINISTLRSMTQAYY
HPENFGHFGLALRSYAHFTSPIRRYADLIVHRALISAHGWGKDGLSAEDTERLEATAKHI
SETERRSMTAERDTTDRYLAAYLSERVGNEMTGHISGIQKFGVFVKLDETGADGLVPVRS
LGAEFFHYDPKEQTLMGADTGTVISVGQKVVVRIAEAVPVTGGLELELLSVEGASLPRGP
RRAKAGVVRRKVNKNKARRDKTRRKVERRRR
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcattccgacaagggacgagatccttcgctggatttcggaccatccgacccag
accgcgaaacgcgacatcgccaaggccttcgggatcaagggagccgcgcgcatcgacctg
aagcgtgtcctcaaggagcttgaggacgaaggccaccttcagaaacgccgcaagacctat
cgcgaccgtgaaaagctgccgcccgtgtcggtcctttccgtgctcgcgcccgatgcctcg
ggcgatctcttcgccaagccgctcgaatgggcgggcgaggggccggagccgcggatcctt
ctgatgctgcgcgaaagcgatccggccgtgggcgaaggcgaacgtatcctggccaagctt
caggaggtgacggatgaggatcatcagtaccaggcccggctgatccgcaagatcggatcg
aacccgcgcaagatcctcggcgttttccgcaagtcggcggaaggcgggcgggtcgtaccc
atcgacaagggcaacgacaaggactggctcgtgcgcgcggggcaggagcagggcgcgaag
gacggcgaactggtcgaggccgagcaggccgggccgaaaaaccgccttgggctgccgcag
gcgcgggtgatcacgcggcttggcgacccgagcgaacccagggccgtctccctcatcgcg
atccaccagcacggcattcccgacgactttcccgacgctgtgatcgcggaggcggatgca
aggaaaccggcggggctcaaggggcgcgaggacctgcgcgacttgccgctcgtgaccatc
gacccggcggatgcccgtgaccacgacgacgcggtctgggccgaatacgacccggatccg
aagaacgagggcggtttcgtcctctgggtcgccattgcggatgtggcttattacgttacg
cccggttccacgctcgaccgtgaggcgtggaagcgcgggaattccacctatttccccgac
cgggtcgtgccgatgctgcccgaccggctgtccggcgatctgtgctcgctgcacgaaggc
gtgccgcgcgcctgcctcgctgtgcgcatggtgatcgacgccgagggcaggaagctgtcg
caccggttcatgcgcggtctgatgcgctcggcggcgacgctcagctatgccgaggtccag
gcggcgcgcgacggccagccgaacgacagatgtgcgccgctcatggagagtgtcatcacg
ccgctttacggtgcttacgaggcgctcgcacgggccagaaaggcacggcagcctctggat
ctcgaccttcccgaacgcaagatcgtgctgggcgaggacggacgggtgaaatcggtcgcg
ctcgccgaacgcctcgatgcccaccggctcatcgaggaattcatggtcctcgccaatgtc
gcggcggcggaagaactgttccatcgcaaccggccgcttctctaccgcgttcacgaggag
ccttcgctcgaaaagctcgacgcgctgcgcgaggtggcgcaggcctccggcttcacgctc
gcgaagggtcaggtgatccacacatcccatctcaacaagcttctcgcgcaggccgagggg
acggatcacgacgagctcatcaacatctccaccctgcgttccatgacgcaggcctattac
catccggagaatttcggccatttcggcctcgcgctgcgctcctatgcgcatttcacctcg
ccgatccggcgttatgcggacctgatcgtgcaccgcgcgctgatctccgcacatggctgg
ggcaaggacgggttgtccgccgaggataccgagaggctcgaagccacggcaaagcacatt
tcggagacggagcgccgttccatgacggcggaacgggacaccacggaccgttacctcgcc
gcctatctcagcgaacgggtcggaaacgagatgaccggccatatctctggcattcagaaa
ttcggcgtcttcgtcaagctggacgagaccggtgcggacgggctcgtgccggtgcgaagc
ctcggggctgaattctttcactacgatccgaaggaacagacgctcatgggggcggatacc
ggtacggtgatatccgtcgggcaaaaggtcgtggtgcggatcgcggaggccgttccggtg
accggcggactcgagctcgaacttctctcggtcgagggggcgagcctgccgcgtggtccg
cgacgggcaaaggccggcgtggtgcggcgcaaggtcaacaagaacaaggcgaggcgggac
aagacgcgcaggaaggtcgaacgccgccggcgatag
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