Ctenopharyngodon idella (grass carp): 127494087
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Entry
127494087 CDS
T08802
Name
(RefSeq) collagen alpha-1(XXIII) chain
KO
K24355
collagen type XXIII alpha
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cide00536
]
127494087
Glycosaminoglycan binding proteins [BR:
cide00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127494087
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
127494087
NCBI-ProteinID:
XP_051715641
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Position
14:complement(19395298..19546124)
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AA seq
599 aa
AA seq
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MDPSAERNTESKQNAAKPLYLRYLVSFPTIVCLVISLSSIAVCFLMTFKTHQMESRLRAL
EIKMSDICQESSVDVSVSQELRESIETLLQERLNEAMPKLRVARDVTQDCNCPPGPPGKR
GRMGRRGDPGPPGKPGRDGYPGPLGLDGKPGTPGPKGSQGLPGPKGDKGDQGDTGPRMVF
PRYDHGYISADQPSFQRRMLKGDQGQAGPPGPPGPPGAPGARGPPGNTGKDGPRGPPGDS
GAPGRDGVEGQRGLPGKPGEVGAQGYPGPQGPPGPKGEQGEPGPQGDRGTDGLPGLKGDK
GDVGEQGPQGETGRPGDKGTSASGDIIDFNGKLLDAFQGPPGPPGPPGPPGKEGPKGELG
LPGPAGVDGEKGDKGDTGEPGESGERGEKGEMGLSGPSGVDGQKGEKGDSILEDNLVQMI
SQPGPPGPPGPPGPPGYMGHRGIPGPKGDPGESIKGEKGEIGASGIQGLQGPQGPPGSTG
LVGLPGTKGEKGKQGEPGLDGFPGIKGDRGERGERGEKGDRGPVGKRGLKGKKGEQGPPG
LDQPCPVGADGCKKEAVEMGHPAPEAPCPLGPDGLPIPGCWHKEQGMLQKLKRKRLSQP
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggatccatctgcggaaagaaatacagaaagcaaacagaatgctgcgaaaccgctttat
ctgcgctatttagtgtcttttccaaccatagtgtgtttagtgatatcgctgagttcaata
gcggtgtgctttctcatgacttttaaaacgcatcagatggagagcaggctgcgcgcgctg
gagataaagatgagtgacatctgtcaagagtcatctgtggacgtctctgtttcacaggaa
cttcgggaatccattgaaacactcttacaagagaggctgaatgaagcaatgccaaagttg
cgtgtggctagagacgtgacacaagactgcaactgtcctccaggtcctcctgggaaacgt
ggacggatgggcagaagaggtgaccctggacccccaggcaaacctgggcgcgacggttac
ccgggtccacttggtctggatggcaaacctggtactcctggacctaaaggaagccagggg
ctgccgggaccaaaaggagataagggtgaccaaggagacactgggcccaggatggtcttt
cctcgttacgatcatggctacatctcggccgatcagcccagtttccaaaggcgtatgctg
aagggtgatcaaggacaagctggcccacctggacctccaggccctcctggagcacccggt
gcaagagggcccccaggaaacactgggaaggacggcccccgtggcccaccaggagattca
ggtgctcctggacgagatggagtagagggacaaagaggtttaccaggaaaaccgggtgaa
gttggtgctcaaggttacccaggaccgcagggacccccagggccaaagggcgagcaggga
gagccaggtcctcagggtgaccgaggaaccgatggtctgccaggcttgaagggagataaa
ggagatgttggagaacaaggaccccagggcgaaacgggccgccctggtgataaaggcaca
tcagcatccggtgacatcattgacttcaatggcaaactcttagatgcctttcagggacca
cctggccctcctggacccccgggaccaccaggaaaagaaggtccaaagggtgaacttggt
ttgcctgggcctgctggggttgatggcgaaaagggtgataagggagacactggagagcct
ggtgaatctggagagaggggtgaaaaaggagaaatgggcctctctggtccctctggagtg
gatgggcagaaaggagagaaaggagactctatactagaggacaatctggttcagatgatt
tcacaaccaggaccaccagggcctccaggtccaccaggaccacctggatacatgggtcat
cgtggcataccaggccccaaaggtgatccaggggagagtattaaaggagagaagggagaa
atcggtgcttcaggaatacaaggccttcagggtcctcaagggcccccgggttcaacagga
ttagttggtcttcccggcacaaagggtgaaaagggaaaacaaggggaacctggattagat
ggttttcctggcattaaaggagacaggggtgagcgtggggagagaggagagaagggagat
cgtggtcctgtcggaaagagaggcctcaagggaaagaaaggtgaacagggaccgccgggt
ctggaccagccctgtcccgtgggagctgatggatgtaaaaaagaggcggtggaaatgggg
catccggcccctgaggccccctgcccactgggtcctgatggacttccaataccaggttgt
tggcacaaggagcagggaatgcttcagaaactcaagaggaaacgtctctcccagccttga
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