Ctenopharyngodon idella (grass carp): 127494142
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Entry
127494142 CDS
T08802
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide02010
ABC transporters
cide04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
127494142
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
127494142
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cide02000
]
127494142
Transporters [BR:
cide02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
127494142
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
Motif
Other DBs
NCBI-GeneID:
127494142
NCBI-ProteinID:
XP_051715742
LinkDB
All DBs
Position
14:19299841..19339995
Genome browser
AA seq
2282 aa
AA seq
DB search
MSISTQLGLLLWKNFTYRRRQTLQLLTEIVWPLFIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIVCNANNPCFRHPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDN
SLDGFKELISAVKIMQNNTAGFKLKDFLRENETLSTFLQQNASFSQNFVKNILEADVNLE
KVLIKGFGVHLRDMCSSTTLEDFVTISDKGVAGFTQDIICTSPNSWLDQAERHFKSNLDF
LKPIRSEIRTNATDVRQVAKATDNLLESLGSLAVELASMRSWSDLRNEILFLTKNATGSP
SLMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNFQALFGSHNDSDDEPVSIYDNTTTPYCN
NLMRNMEASPISRMIWRALKPLLMGKILYTPHNPATQKIIHEVNKTFQELGILRDLGGMW
EEARPKFWNFMENSEEMDLMRTLLRNNATASFFSAQLAGTQWNVEDVISFLSKHSEDTRP
HGTAFTWRDVFNETDQAIMSISRFMECVNLDKLEPVSTEEKLVNESMSLLDNRKFWAGIV
FLDVQPNSSELPPHVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFTYLQ
DVVEHSIIRAITGTKEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFMTLAWMYSVAIIIK
GVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVLLLKMGNLLPYSDPGV
VFLFLVSFAVVTIMQCFLISTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFTAKV
IASLLSPVAFGFGCEYFALFEEQGVGIQWYNLFSSPMEEDNYNLTTCLILMYFDAFLYGV
MTWYIETVFPGQYGIPRPWYFPFTKSYWFGENSTNNTAIHGKKGNAGAVCIEEEPTHLEL
GVYIDNLVKVYSHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTA
YIMGKDIRSELSSIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKAEMEQILT
DTGLPHKRKSRTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKY
RAGRTILLSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKKNNEPS
LSSCRNSSSTVSFIKKDDNASESSSDAGLGSDQESEAATAIGTTWPESPVVPVDVALISS
LILKHVPASRMVEDLGHEITYVLPYESAKDGAFVELFHDLDDRLADLGISSYGVSDTTLE
EIFLKVAEDSGVDTEIISDGTVPVRRHRQHAFGGDHQSCLKPLTDDDDFECNESDGDPES
KETDYLSVSDGKGSYQVKGWSLKRQQFVALIWKRFLYARRSRKGFFAQIVLPAVFVCIAL
VFSLIVPPFGKYPSLALNPWMYEEQFTFISDDAPHDISTQKLLNALLDDPGFGTRCMEGE
PIPEAPCTMGDEEWSTPEVAESVMDIFTTTNWTMDNPSPACECSCNGKKKMLPECPAGAG
GLPPPQIKISETETLQNLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARST
QVLPPAEEVDDAISRVRDIFQLGKDSGSAPDRFLKSLSAFINGLDTKNNVKIWFNNKGWH
SVGAFLNVMNNGILRANLPPGKDPRQFGITAFNHPLNLTKEQLSQVALMTTSVDVLVSIC
VIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPYLYWLANFLWDMCNYVVPATLVILI
FVCFQQKAYVSATNLPVLALLLLLYGWSITPLMYPASFLFKIPSTAYVVLTSVNILIGIN
GSVSTFVMELFGNNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERFGENRF
RSPLEWDMVGKNLFAMAVEGAVFFIITVLIQYRFFFEPKSLSTKLSPIGEEDEDVARERQ
RIMSGAGQGDILELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLT
GDSVVSKGEAFLAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKE
VCEVAEWGIRKLGLVKYVDKKAGSYSGGNMRKLSTAISLIGAPPVVFLDEPTTGMDPKAR
RALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYT
IILRVAGPDPDLQPVMKFIEYELPGSTLKEKHRNMLQYQLSSSLTSLAHIFSILAKNKEF
LRIEDYSVSQTTLDQVFVNFAKDQSDDHSDSSIRRKETAVNMALLSPLSTKENMEKPIES
FV
NT seq
6849 nt
NT seq
+upstream
nt +downstream
nt
atgtctatctccactcagctgggtctgctgctgtggaagaacttcacctatagaagaaga
caaacgctccagctgctgacggagattgtgtggcctctctttattttcttcatcctgatc
gccgtgaggttgaattacccaccttacgaacaacatgaatgtcactttccaaacaaagcc
atgccctcagcaggcaccctgccctggatccagggcattgtctgcaatgccaacaatccg
tgtttccgacacccaacccctggggaatctccgggagtcgttgggaacttcaatgattcc
ataatctcacgcctgttttctgatgccaagaagatcttactttacagtcaaaatgacaac
agcttagatggattcaaggagcttatcagtgcagtaaaaatcatgcaaaataacacagct
ggtttcaagctaaaggacttcctgcgtgaaaacgagactctctcaacgttcctccagcaa
aatgcctcattctcccagaattttgtgaagaatattctggaagctgatgtgaatcttgaa
aaggtactgatcaaaggttttggcgtccatctgagagatatgtgcagctccaccacactt
gaggactttgtgaccatctcagacaaaggggtggcgggattcacccaggacatcatctgc
acgtctccaaatagctggctagaccaggccgaaagacacttcaagtccaacctggatttc
ctcaaacctatcaggtcagaaataagaactaatgccactgatgtccgtcaagttgccaaa
gccacagacaaccttctggagagccttggatcactggctgtggagttggccagcatgagg
agctggagtgatctgcgaaatgagatcctgtttctgaccaaaaacgccaccggctcacca
agcctgatgtaccaggctgtgtcccgtattgtgtgtggtcacccagaaggcggtggacta
aagatcaaatccctcaactggtacgaggacagcaatttccaggctctgttcggcagccac
aatgacagcgatgacgaaccggtttcaatctacgacaataccacaactccatactgtaac
aacttgatgaggaacatggaagccagtccaatctctcggatgatctggagagcattaaaa
cctcttctgatggggaagatcctctacacgccacataaccctgcaacacagaagatcatt
catgaggtcaataagacttttcaggagcttggaattctacgagatttaggaggaatgtgg
gaagaagccagaccaaagttttggaacttcatggagaacagtgaagaaatggatcttatg
cggacgcttcttcgaaacaatgccactgctagtttctttagtgcccagttggctgggact
cagtggaacgtggaggatgttatcagtttcttgtctaagcactctgaggatacacgtccc
catggaacagcatttacgtggcgggatgtcttcaatgagacggaccaggccattatgagc
atatcccgtttcatggagtgtgtaaacttggataaacttgaacctgtaagcacagaggag
aaactggtgaacgagtccatgagtctcctggataacagaaagttctgggcgggaattgtg
ttcctggacgtacagcccaacagctcagaacttccaccacacgtcaattacaagatccga
atggacatcgacaacgtggagcgcacaaacaagattaaagatgggtattgggatcctggt
cccagggctgatccctttgaggatttgcggtatatttggggaggatttacttaccttcag
gatgtagttgaacacagcatcatcagagcaattactgggaccaaagagaagactggtgtt
tatatccaacagatgccttatccatgttatgtagatgatattttccttcgcattatgagc
cgctccatgcctctcttcatgactctggcctggatgtattcggtggccatcatcatcaaa
ggcgttgtctacgagaaggaggcccgactcaaggagaccatgaggattatgggactggac
aatggaatcctgtggttcagctggttcatcagcagcctcattcctcttctcatcagtgca
ggcctgctggttcttctactcaagatgggaaatctcctgccctatagtgaccctggcgta
gtctttctcttcctcgtgtcatttgctgtggtaaccatcatgcagtgtttcctgatcagt
acagcgttcgcacgtgccaacctggcagcagcctgcgggggcattatctactttaccctc
tacctgccttatgtgctgtgcgtggcttggcaagactacgtgggcttcaccgccaaagtc
atcgctagcttactgtctccagtggcatttgggtttggctgtgagtattttgcactgttt
gaggagcagggtgtgggcatccaatggtataacctcttctccagccccatggaagaggac
aactacaacctcaccacctgcctcatcctcatgtactttgatgccttcctgtatggggtc
atgacctggtacattgagaccgtgttcccagggcagtacggcattcccaggccgtggtac
ttccccttcactaaatcttactggtttggagagaacagcacaaacaatactgcaatacat
ggaaagaagggcaatgctggggctgtttgcattgaagaggaacccactcatcttgaattg
ggagtttacattgacaatcttgtgaaggtctacagtcacggcaaaaagctagcggtcgat
gggttgacacttggcttctatgaggggcagataacctcgtttctaggtcacaatggagct
ggaaaaactacgaccatgtctatcttaactggccttttccctcccacctctggcactgcg
tatatcatgggcaaagacattcgctcagagctgagttctatcaggcagagcctcggagtg
tgtccacaacacaacgtcctcttcagcatgttgacagtagaagagcacatctggttctac
gcccgtctaaagggtctgtctgaggagaaagtgaaggctgagatggagcagatcctgact
gatactggccttccacacaaacgcaaatccaggaccagccagttgtcaggtggtatgcag
aggaaactctctgtagcccttgcttttgttggagggtcaaaggttgtcattctggatgag
cctaccgctggtgtggatccatacgctcgtagaggcatctgggatcttcttctgaagtat
cgtgctggtcggactatccttctttccacccatcatatggatgaagcagacattctgggt
gatcgcattgccatcatctcccatggaaagctttgttgtgtgggctcttcgctgtttctg
aaaactcaactgggaaccggatactatcttaccttggtaaagaaaaacaatgaaccttct
ctcagttcttgcaggaactcaagcagcacagtgtctttcattaagaaagatgacaatgca
tctgagagcagttcagatgctggtcttggtagcgaccaagagagcgaagctgccacagca
attggaactacttggcctgaatctcctgttgttcctgttgatgtggccctcatctccagt
ctaatcctgaagcatgttcccgcttcccgcatggtggaagaccttggtcatgagatcaca
tatgtgttgccgtatgagtctgccaaagatggtgctttcgttgagctctttcatgacctg
gatgatcggctcgctgaccttggcatttcgagctatggtgtctcagatactacacttgaa
gagattttccttaaagtggcagaggacagtggagttgacacagaaatcatctcagatgga
actgtgccagtgcgtagacatagacaacatgcatttggcggtgaccaccagagctgcctc
aaacccctaaccgatgacgatgactttgagtgcaacgaatctgatggtgatccagaatcc
aaagagacagactatttgagcgtgtctgatggaaaaggatcatatcaggtgaaaggctgg
agtttaaagaggcagcagtttgtggcgttaatatggaagagatttctttatgctcgccgc
tcaaggaaaggcttctttgcacagattgttcttcccgctgtgtttgtgtgcatcgctctg
gtattcagtcttattgtgccaccatttgggaaatatcccagcctggctcttaacccctgg
atgtatgaagaacaattcacgttcattagtgatgatgctccacatgatataagcacacaa
aaattactcaacgccttattagatgatcccggctttggaacgcgatgcatggaaggagaa
ccaattcctgaggctccctgtacaatgggcgatgaggaatggtctacaccagaagtggca
gaaagcgtgatggacattttcacaacgacaaactggactatggacaacccatcgcctgct
tgtgagtgcagctgtaatggcaaaaagaagatgctcccagaatgccctgccggtgctggt
ggactgccacctcctcagattaagatcagtgaaactgagaccctccagaacctgacagga
cgaaacatctcagactatctagtgaagacctatgcacagatcattgggaaaagcttaaag
aacaagatctgggtgaacgaattcagatatggaggattttcattgggtgctagaagcact
caggtacttcctcctgctgaggaggtcgatgatgccatctctagagtcagggatatcttc
caactggggaaggactcaggatcagcgcccgaccgtttcttgaaaagcctgtctgccttc
atcaatgggctggacactaagaataatgtcaagatatggttcaataacaagggctggcac
agtgttggagcctttctcaatgtaatgaacaatggtattttgcgtgccaacttaccacct
ggcaaagacccccgtcagtttggcatcactgcgttcaaccatccgctcaatctgaccaaa
gaacagctttctcaagtggccctgatgactacctcagtggacgtgctggtttccatctgt
gtgatcttcgccatgtccttcgttcctgccagctttgttgtctttctcattcaggaacga
gtgaataaggccaagcatatgcagtttatcagcggagttcagccatacctttactggttg
gccaactttctctgggatatgtgtaattatgtcgttcctgctactctggtgatcctgatc
tttgtgtgcttccaacaaaaggcctatgtctccgccaccaacttgcctgttcttgctctt
ctgctgcttctatatggatggtccatcactcctcttatgtacccggcttctttcctcttc
aaaatccccagcactgcttatgtggttctcactagtgtcaacatccttattgggatcaat
ggcagcgtgtccacttttgtcatggagttatttggaaataatgagattggtggtattaac
gacatcctgaagaacgttttgctcatcttcccgcacttctgcctgggtcgaggtctcatt
gacatggtgaagaatcaggccatggctgacgctctagagagatttggtgagaaccgtttc
cgttctccactggagtgggacatggtgggcaagaatctttttgctatggctgtggaagga
gcggtattcttcatcatcacagtccttatccagtaccgtttcttctttgaacccaagtct
ttaagtaccaagttgagtccgattggagaggaagatgaggatgttgccagagagaggcag
aggatcatgagtggagctggacaaggagacattcttgaacttcgacaactcactaaggtg
tacaagcggaaacagaagcccgctgtcgatcgtctatgtgtgggaattcctccaggagag
tgttttggtctgcttggtgtcaatggagctggaaagaccagcacttttaaaatgctgacc
ggagactctgtggtcagcaaaggagaagcattcttagctgggaaaagtatactcagagaa
atagatgaagtacatcaaaacatgggctactgccctcagtttgatgccatcaatgatctg
ctgacaggacgggaacacctggaattctacgccatccttcgcggtgtacctgagaaggaa
gtctgtgaggtggcagagtggggaatccgtaagctgggtctcgtgaagtatgtggacaaa
aaggctggaagctacagcggtggcaacatgcgcaaactctccaccgccatatcactcatt
ggagcccccccagtggtcttcctggacgagcccaccactggaatggaccccaaagcacga
cgagcactgtggaactgcatccacagcgtcatcaaagagggacgctctgtcgtgcttacc
tcacacagcatggaagaatgtgaagcactgtgcaccaggatggccatcatggtgaacggc
aggttccgctgtctgggtagcgtccaacacctgaagaacagatttggtgatggatacacc
atcattctgcgggttgcagggccagatcctgacctgcagccggtgatgaagttcattgag
tacgagctgccgggcagcactctgaaagagaaacacagaaacatgctacaataccagctt
tcctcctcccttacctccctcgctcacatctttagcatcctcgctaagaacaaggagttt
ctcaggatagaggactactccgtgtcccagaccactctggaccaggtatttgttaacttt
gccaaggaccaaagtgacgaccactcagacagctccattcgtcgtaaagagacagcggtg
aacatggccctcctgagccctctgtctactaaagagaacatggagaagccaatagaaagc
tttgtctga
DBGET
integrated database retrieval system
