Ctenopharyngodon idella (grass carp): 127494702
Help
Entry
127494702 CDS
T08802
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03013
Nucleocytoplasmic transport
cide03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127494702
09122 Translation
03013 Nucleocytoplasmic transport
127494702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127494702
03041 Spliceosome [BR:
cide03041
]
127494702
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
127494702
Spliceosome [BR:
cide03041
]
Complex C
Other components
EJC/TREX
127494702
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127494702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
127494702
NCBI-ProteinID:
XP_051716764
LinkDB
All DBs
Position
14:complement(29321430..29415100)
Genome browser
AA seq
1562 aa
AA seq
DB search
MAALILPSDWIKNWDKSGKNEFLQFFQDLAGKPSGQEFVKDLQSALYELCWHVIQGNLKV
DVAAGLLADVMELRDDMPSILADVFCILDIETGCLEEKHKRDHFTQLVGACLICVPDGVL
KERLDPETLESLGLIKQAQQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNLTSHIVLESIKSLIGCFNLDPNRVLDIILEVYECRSDHDEFFIPLIKSYMCEHQTLC
HMLGFKFKFHQEPNGETPSSLYHIAAALLQHNLIALEDLYVHLLPLDSSIVEEHKREILE
AKQIARKLTMVVVPSEKAEDKEKEKEKEEEKNEKPPDNQKLGLLEALLRIGDWQHAQSIM
DQMPAFYATSHKAIAIALCQLLHLTVEPLYRRAGVPKGAKGGLMTPLRNKQAPRPAESFD
DLSRDVFTMLCYLGPHLSHDPILFAKIVRLGKSFMKEYQSESRQDIKDKTDSLLSCFLSI
ADQVLLPSLSLMECNACMSEEIWGFFKLFPYQHRYRLYGQWKNETYGNHPLLVKIKAQTV
DRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLITPVVDSLKYLTS
LNYDVLAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTN
QLKAGKSFDLLILKEVVQKMAGIEITDEMTVEQLEAMTGGEQLKAEGGYFGQIRNTKKSS
QRLKDALLDHELALPLCLLMAQQRNGVVFSEGGEKHLKLVGKLYDQCHDTLVQFGGFLAS
NLSTEDYIKRVPSVDVLCNQLHTPHDAAFFLSRPMYAHQILSKYDELKKAEKGNRQQQKV
HKYIAACEQIMTPVHEAVVSLHLPKVWDDLRPQFYATFWSLTMYDLAVPHNAYDREVNKL
KMQIKAIDENTEMPLNKKKKEKERCTALQDKLQEEEKKQLEHVQRVLHRLKLEKDNWLLA
KSTKNETITKFLQLCIFPRCVFSAIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSDIIY
TVASCTENESRRYGRFLCCMLETVTRWHSDRAIYEKECGNYPGFLTIFRASGFDGGNKAD
QLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALEC
RVHKICQEEKEKRPDLYALAMGYSGQLKGRKVHMVPENEFHHKEQPVRSATPGNLQNGPG
NTGKPATTAAASAGKTEEGAAEDSDKSKDKSQTAQKTASKNSTAANKVSSSNGSSTPNST
KGSKEKEDKEKTTKEKKEKKEKNPASTPEAKAGGKDKPKEERSKEEKPFDSKEKTPKAEK
DKRKDDKKEEKSKIDGKSAEKEWPKERDVSNDSKTKESSKVEKNAGAGSLKSLVPRSEGV
ESERAEQKRRKLDTHSSPSHSSAVKDNLNDLKDSASKHHPNHSTVLSKSKEKDDEKKESD
KSRDRSKEREKKEDRKERKRDYANSDREMSQEAKRRKDENGMNSSKHSKSASPSESPHSN
DKDNGKRSKSTSKDKGDLAKPEKTSGGKKESRHDKEKSEKKRDSTGAKEEKKHTHKSSEK
HR
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcttatcctcccgtctgactggataaaaaactgggacaaatccggcaaaaat
gagtttttacagtttttccaggaccttgcagggaaacccagtggtcaggagtttgttaaa
gatctgcagtcagccctgtatgagctctgctggcatgttatccagggcaatctgaaggtg
gatgtggctgccggtctcctggctgatgttatggagctgcgggacgatatgccttctatt
ttagctgatgtattctgtatattagatattgagactggctgtttggaggagaaacacaaa
cgagatcattttacccagttggttggagcctgtttgatctgtgttcctgatggtgtgcta
aaagagagattagatccagaaacgctggaatctctgggactgatcaaacaggctcagcag
tttaaccagaagattgtcaaaatcaagaccaaattattttacaaacagcagaagttcaat
ttgttgcgtgaggagaatgaaggttacgctaagctgatcacggagcttgggcaggacctg
tccgggaatctcaccagccacatcgttctggagagcatcaagtcattaataggatgtttc
aatctggacccaaaccgcgtgctggacatcatcttagaggtgtatgagtgtcgctctgac
cacgatgagttcttcatccctcttatcaagtcctacatgtgcgagcaccagaccctctgc
cacatgcttggcttcaagttcaagttccatcaggagcctaatggagaaacgccatcatct
ctgtaccacatcgctgcagctcttcttcaacacaacctcatcgctcttgaagacctctac
gtacatctccttccactggactccagcattgttgaagagcacaagagagagatcctggag
gccaagcagattgctcgcaaactcaccatggtggtcgttccctctgaaaaggcagaggac
aaggagaaagaaaaggagaaggaagaggagaagaatgagaagcctcctgataaccagaag
ctggggctgctggaggcgctgctgaggatcggtgactggcagcatgctcagagcatcatg
gatcagatgccagctttctacgccacctcccacaaggccatcgccatcgcactgtgccaa
ctgcttcacctaaccgtggagccgctctaccgcagggccggagtccccaaaggtgccaaa
ggcggtttaatgacgcctctgcggaacaaacaggcaccgcggccggccgaaagctttgac
gatctctccagggatgtcttcaccatgctgtgctacctgggccctcacctgtcccatgac
cccatcctgtttgccaagattgtgcgactcggcaagagttttatgaaagagtaccaaagt
gaaagcagacaagacatcaaggacaaaacggactctctgctgagctgttttcttagtatt
gctgatcaggtgttgttaccatctctctcactcatggagtgcaacgcctgcatgtcggaa
gagatctggggcttctttaaactcttcccctatcagcacagatatcgcctctatgggcag
tggaagaatgagacgtatggcaatcatcccctcctggtgaagatcaaggctcaaacggta
gaccgagccaaatacatcatgaagcgactgactaaagaaaatgtgaagccctcaggaagg
cagatcggaaagttaagccacagtaaccccaccattctctttgattatattctgtctcag
atccagtggtatgacaacctgataactccagtggtggactctctcaaatacctcacctct
ctcaactacgatgtgctggcctattgcattattgaagctttagccaacccagagaaagag
aagatgaaacatgatgacacgaccatttcatcatggctgcagagtcttgctagtctttgt
ggagcagttttcagaaaatatcccattgagttagctggtcttctgcagtatgtgaccaac
cagctgaaagcaggcaaaagttttgacctgctgatcctgaaggaggttgtgcagaagatg
gcaggaattgagatcacagatgaaatgaccgtggagcagctggaggccatgacaggcgga
gaacagcttaaagcagagggtggctactttgggcagatcaggaacactaagaagtcttct
cagcgtctgaaggatgctcttctggaccatgagctggcattaccgctgtgtctgctgatg
gcgcagcagaggaatggcgtggtcttctctgaggggggagagaagcatcttaaactcgtg
gggaagctttacgatcagtgtcacgacacacttgtgcagtttggtggctttttggcatct
aacctcagtacagaagactacatcaaaagggtgccatcagtcgatgtcctctgcaaccag
ctccacacgccacacgacgccgccttcttcctgtctcggcccatgtatgcccatcagatt
ctgtccaagtatgacgaattgaagaaggcagagaagggcaaccggcagcagcagaaggtc
cataagtacattgcagcctgtgagcagattatgacccctgtgcatgaggctgtcgtctct
cttcacttgcccaaagtgtgggatgatcttcgaccccagttctatgccaccttctggtcc
ctcaccatgtacgacctggcggtaccacacaatgcctacgaccgggaggtcaacaagctt
aagatgcagatcaaggccattgatgaaaatacagagatgcccctgaataaaaagaagaaa
gagaaggaacgctgcacagcgctgcaggacaagctgcaagaagaggagaagaaacagcta
gagcatgtgcagagagttctgcatcgcctcaaactggagaaagacaactggttactcgcc
aaatccactaagaatgaaaccatcactaagttcctgcagctctgcatcttcccccgctgc
gtcttctcagccattgacgcagtttactgtgctcgcttcgtggagctggtacaccagcag
aagacgcccaacttctgcaccctactttgctacgacagagttttttctgacatcatctac
acggtagcgagctgcacggagaacgagtcccgccgctacggtcgttttctgtgctgcatg
ctagagactgtgactcgatggcacagtgacagagccatctatgagaaggaatgtggcaat
taccctgggttcctgactattttccgagccagtggttttgacggagggaacaaagcagat
caactggactatgagaatttccggcatgttgtccacaaatggcattacaagttgactaaa
gcatcagtccactgtctggagacgggcgagtacacccacattcgcaacatcctgatcgtg
ctcaccaagatcctaccctggtaccccaaggtgctgaacttgggccaggctctagagtgc
cgcgttcacaagatctgccaggaagagaaagagaagaggcccgatctctatgcgttagcc
atgggctactctggccaattgaaaggcaggaaagtgcacatggtgcctgaaaatgagttc
caccataaggagcagccagtgcgcagtgccacgcctggcaatctgcagaacggacctggc
aacacgggcaagcctgcgaccactgccgctgccagcgctggcaaaactgaggagggggcc
gccgaggattcagataaatccaaggacaaatctcagacggctcagaaaactgccagcaaa
aacagcaccgcagccaataaagtgagcagcagcaacggaagcagcacgccaaacagcact
aaagggagcaaagagaaggaagataaagagaagaccacaaaggagaaaaaggagaagaaa
gaaaagaacccagcaagcactccagaggccaaggcaggagggaaggacaaaccgaaggag
gaaagatccaaggaggagaagccctttgacagcaaggagaagacgcccaaggccgagaag
gataagaggaaggatgacaagaaggaagagaagagcaagatcgatgggaaatctgctgaa
aaagagtggcccaaggaacgcgacgtgtccaacgacagcaagacaaaggaaagcagcaag
gtggagaagaacgctggggccggaagcctgaagtcccttgtgcccagatctgagggagtc
gagtctgaacgggcagagcaaaaaagacgaaagcttgacactcactcgtcaccatcgcac
tcctctgcagttaaggacaatctcaacgacctcaaggactctgcttcaaagcaccatcct
aaccacagcacagtcctgtccaagagcaaagagaaggacgacgagaagaaagagtctgac
aaatccagggaccgctccaaagagagggagaagaaagaagaccggaaggaaagaaaacga
gactacgcgaacagcgaccgtgagatgagccaggaagccaagcgccgcaaagatgaaaat
ggaatgaactcctccaaacacagcaagagcgccagcccctccgaatcgccacactccaac
gacaaggacaacggtaaacgctccaagtccaccagcaaggacaaaggcgatctggccaaa
ccagagaagacctctggaggcaaaaaggaatccaggcatgacaaagagaaatcagaaaag
aagagagacagcaccggcgctaaagaagagaagaaacatacccataaatcatcagaaaag
cacagataa
DBGET
integrated database retrieval system