KEGG   Ctenopharyngodon idella (grass carp): 127494702
Entry
127494702         CDS       T08802                                 
Name
(RefSeq) THO complex subunit 2 isoform X1
  KO
K12879  THO complex subunit 2
Organism
cide  Ctenopharyngodon idella (grass carp)
Pathway
cide03013  Nucleocytoplasmic transport
cide03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cide00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127494702
  09122 Translation
   03013 Nucleocytoplasmic transport
    127494702
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cide03019]
    127494702
   03041 Spliceosome [BR:cide03041]
    127494702
Messenger RNA biogenesis [BR:cide03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     127494702
Spliceosome [BR:cide03041]
 Complex C
  Other components
   EJC/TREX
    127494702
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    127494702
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 127494702
NCBI-ProteinID: XP_051716764
LinkDB
Position
14:complement(29321430..29415100)
AA seq 1562 aa
MAALILPSDWIKNWDKSGKNEFLQFFQDLAGKPSGQEFVKDLQSALYELCWHVIQGNLKV
DVAAGLLADVMELRDDMPSILADVFCILDIETGCLEEKHKRDHFTQLVGACLICVPDGVL
KERLDPETLESLGLIKQAQQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNLTSHIVLESIKSLIGCFNLDPNRVLDIILEVYECRSDHDEFFIPLIKSYMCEHQTLC
HMLGFKFKFHQEPNGETPSSLYHIAAALLQHNLIALEDLYVHLLPLDSSIVEEHKREILE
AKQIARKLTMVVVPSEKAEDKEKEKEKEEEKNEKPPDNQKLGLLEALLRIGDWQHAQSIM
DQMPAFYATSHKAIAIALCQLLHLTVEPLYRRAGVPKGAKGGLMTPLRNKQAPRPAESFD
DLSRDVFTMLCYLGPHLSHDPILFAKIVRLGKSFMKEYQSESRQDIKDKTDSLLSCFLSI
ADQVLLPSLSLMECNACMSEEIWGFFKLFPYQHRYRLYGQWKNETYGNHPLLVKIKAQTV
DRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLITPVVDSLKYLTS
LNYDVLAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTN
QLKAGKSFDLLILKEVVQKMAGIEITDEMTVEQLEAMTGGEQLKAEGGYFGQIRNTKKSS
QRLKDALLDHELALPLCLLMAQQRNGVVFSEGGEKHLKLVGKLYDQCHDTLVQFGGFLAS
NLSTEDYIKRVPSVDVLCNQLHTPHDAAFFLSRPMYAHQILSKYDELKKAEKGNRQQQKV
HKYIAACEQIMTPVHEAVVSLHLPKVWDDLRPQFYATFWSLTMYDLAVPHNAYDREVNKL
KMQIKAIDENTEMPLNKKKKEKERCTALQDKLQEEEKKQLEHVQRVLHRLKLEKDNWLLA
KSTKNETITKFLQLCIFPRCVFSAIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSDIIY
TVASCTENESRRYGRFLCCMLETVTRWHSDRAIYEKECGNYPGFLTIFRASGFDGGNKAD
QLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALEC
RVHKICQEEKEKRPDLYALAMGYSGQLKGRKVHMVPENEFHHKEQPVRSATPGNLQNGPG
NTGKPATTAAASAGKTEEGAAEDSDKSKDKSQTAQKTASKNSTAANKVSSSNGSSTPNST
KGSKEKEDKEKTTKEKKEKKEKNPASTPEAKAGGKDKPKEERSKEEKPFDSKEKTPKAEK
DKRKDDKKEEKSKIDGKSAEKEWPKERDVSNDSKTKESSKVEKNAGAGSLKSLVPRSEGV
ESERAEQKRRKLDTHSSPSHSSAVKDNLNDLKDSASKHHPNHSTVLSKSKEKDDEKKESD
KSRDRSKEREKKEDRKERKRDYANSDREMSQEAKRRKDENGMNSSKHSKSASPSESPHSN
DKDNGKRSKSTSKDKGDLAKPEKTSGGKKESRHDKEKSEKKRDSTGAKEEKKHTHKSSEK
HR
NT seq 4689 nt   +upstreamnt  +downstreamnt
atggcggcgcttatcctcccgtctgactggataaaaaactgggacaaatccggcaaaaat
gagtttttacagtttttccaggaccttgcagggaaacccagtggtcaggagtttgttaaa
gatctgcagtcagccctgtatgagctctgctggcatgttatccagggcaatctgaaggtg
gatgtggctgccggtctcctggctgatgttatggagctgcgggacgatatgccttctatt
ttagctgatgtattctgtatattagatattgagactggctgtttggaggagaaacacaaa
cgagatcattttacccagttggttggagcctgtttgatctgtgttcctgatggtgtgcta
aaagagagattagatccagaaacgctggaatctctgggactgatcaaacaggctcagcag
tttaaccagaagattgtcaaaatcaagaccaaattattttacaaacagcagaagttcaat
ttgttgcgtgaggagaatgaaggttacgctaagctgatcacggagcttgggcaggacctg
tccgggaatctcaccagccacatcgttctggagagcatcaagtcattaataggatgtttc
aatctggacccaaaccgcgtgctggacatcatcttagaggtgtatgagtgtcgctctgac
cacgatgagttcttcatccctcttatcaagtcctacatgtgcgagcaccagaccctctgc
cacatgcttggcttcaagttcaagttccatcaggagcctaatggagaaacgccatcatct
ctgtaccacatcgctgcagctcttcttcaacacaacctcatcgctcttgaagacctctac
gtacatctccttccactggactccagcattgttgaagagcacaagagagagatcctggag
gccaagcagattgctcgcaaactcaccatggtggtcgttccctctgaaaaggcagaggac
aaggagaaagaaaaggagaaggaagaggagaagaatgagaagcctcctgataaccagaag
ctggggctgctggaggcgctgctgaggatcggtgactggcagcatgctcagagcatcatg
gatcagatgccagctttctacgccacctcccacaaggccatcgccatcgcactgtgccaa
ctgcttcacctaaccgtggagccgctctaccgcagggccggagtccccaaaggtgccaaa
ggcggtttaatgacgcctctgcggaacaaacaggcaccgcggccggccgaaagctttgac
gatctctccagggatgtcttcaccatgctgtgctacctgggccctcacctgtcccatgac
cccatcctgtttgccaagattgtgcgactcggcaagagttttatgaaagagtaccaaagt
gaaagcagacaagacatcaaggacaaaacggactctctgctgagctgttttcttagtatt
gctgatcaggtgttgttaccatctctctcactcatggagtgcaacgcctgcatgtcggaa
gagatctggggcttctttaaactcttcccctatcagcacagatatcgcctctatgggcag
tggaagaatgagacgtatggcaatcatcccctcctggtgaagatcaaggctcaaacggta
gaccgagccaaatacatcatgaagcgactgactaaagaaaatgtgaagccctcaggaagg
cagatcggaaagttaagccacagtaaccccaccattctctttgattatattctgtctcag
atccagtggtatgacaacctgataactccagtggtggactctctcaaatacctcacctct
ctcaactacgatgtgctggcctattgcattattgaagctttagccaacccagagaaagag
aagatgaaacatgatgacacgaccatttcatcatggctgcagagtcttgctagtctttgt
ggagcagttttcagaaaatatcccattgagttagctggtcttctgcagtatgtgaccaac
cagctgaaagcaggcaaaagttttgacctgctgatcctgaaggaggttgtgcagaagatg
gcaggaattgagatcacagatgaaatgaccgtggagcagctggaggccatgacaggcgga
gaacagcttaaagcagagggtggctactttgggcagatcaggaacactaagaagtcttct
cagcgtctgaaggatgctcttctggaccatgagctggcattaccgctgtgtctgctgatg
gcgcagcagaggaatggcgtggtcttctctgaggggggagagaagcatcttaaactcgtg
gggaagctttacgatcagtgtcacgacacacttgtgcagtttggtggctttttggcatct
aacctcagtacagaagactacatcaaaagggtgccatcagtcgatgtcctctgcaaccag
ctccacacgccacacgacgccgccttcttcctgtctcggcccatgtatgcccatcagatt
ctgtccaagtatgacgaattgaagaaggcagagaagggcaaccggcagcagcagaaggtc
cataagtacattgcagcctgtgagcagattatgacccctgtgcatgaggctgtcgtctct
cttcacttgcccaaagtgtgggatgatcttcgaccccagttctatgccaccttctggtcc
ctcaccatgtacgacctggcggtaccacacaatgcctacgaccgggaggtcaacaagctt
aagatgcagatcaaggccattgatgaaaatacagagatgcccctgaataaaaagaagaaa
gagaaggaacgctgcacagcgctgcaggacaagctgcaagaagaggagaagaaacagcta
gagcatgtgcagagagttctgcatcgcctcaaactggagaaagacaactggttactcgcc
aaatccactaagaatgaaaccatcactaagttcctgcagctctgcatcttcccccgctgc
gtcttctcagccattgacgcagtttactgtgctcgcttcgtggagctggtacaccagcag
aagacgcccaacttctgcaccctactttgctacgacagagttttttctgacatcatctac
acggtagcgagctgcacggagaacgagtcccgccgctacggtcgttttctgtgctgcatg
ctagagactgtgactcgatggcacagtgacagagccatctatgagaaggaatgtggcaat
taccctgggttcctgactattttccgagccagtggttttgacggagggaacaaagcagat
caactggactatgagaatttccggcatgttgtccacaaatggcattacaagttgactaaa
gcatcagtccactgtctggagacgggcgagtacacccacattcgcaacatcctgatcgtg
ctcaccaagatcctaccctggtaccccaaggtgctgaacttgggccaggctctagagtgc
cgcgttcacaagatctgccaggaagagaaagagaagaggcccgatctctatgcgttagcc
atgggctactctggccaattgaaaggcaggaaagtgcacatggtgcctgaaaatgagttc
caccataaggagcagccagtgcgcagtgccacgcctggcaatctgcagaacggacctggc
aacacgggcaagcctgcgaccactgccgctgccagcgctggcaaaactgaggagggggcc
gccgaggattcagataaatccaaggacaaatctcagacggctcagaaaactgccagcaaa
aacagcaccgcagccaataaagtgagcagcagcaacggaagcagcacgccaaacagcact
aaagggagcaaagagaaggaagataaagagaagaccacaaaggagaaaaaggagaagaaa
gaaaagaacccagcaagcactccagaggccaaggcaggagggaaggacaaaccgaaggag
gaaagatccaaggaggagaagccctttgacagcaaggagaagacgcccaaggccgagaag
gataagaggaaggatgacaagaaggaagagaagagcaagatcgatgggaaatctgctgaa
aaagagtggcccaaggaacgcgacgtgtccaacgacagcaagacaaaggaaagcagcaag
gtggagaagaacgctggggccggaagcctgaagtcccttgtgcccagatctgagggagtc
gagtctgaacgggcagagcaaaaaagacgaaagcttgacactcactcgtcaccatcgcac
tcctctgcagttaaggacaatctcaacgacctcaaggactctgcttcaaagcaccatcct
aaccacagcacagtcctgtccaagagcaaagagaaggacgacgagaagaaagagtctgac
aaatccagggaccgctccaaagagagggagaagaaagaagaccggaaggaaagaaaacga
gactacgcgaacagcgaccgtgagatgagccaggaagccaagcgccgcaaagatgaaaat
ggaatgaactcctccaaacacagcaagagcgccagcccctccgaatcgccacactccaac
gacaaggacaacggtaaacgctccaagtccaccagcaaggacaaaggcgatctggccaaa
ccagagaagacctctggaggcaaaaaggaatccaggcatgacaaagagaaatcagaaaag
aagagagacagcaccggcgctaaagaagagaagaaacatacccataaatcatcagaaaag
cacagataa

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