Ctenopharyngodon idella (grass carp): 127494756
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Entry
127494756 CDS
T08802
Symbol
si:ch73-233f7.1
Name
(RefSeq) protocadherin beta-15 isoform X1
KO
K16499
protocadherin delta 2
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cide04515
]
127494756 (si:ch73-233f7.1)
Cell adhesion molecules [BR:
cide04515
]
Cadherins
Protocadherins
127494756 (si:ch73-233f7.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_tail
Motif
Other DBs
NCBI-GeneID:
127494756
NCBI-ProteinID:
XP_051716864
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All DBs
Position
14:complement(24130180..24139727)
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AA seq
1009 aa
AA seq
DB search
MDRRLPRRRWTLAGQVVCLLLCACALDRVLAQIRYSIPEELEHGAFVGNIAEDLGLDVAK
LSSRRFRIVSGARKQYLEVNLENGILFVNEKIDREELCEQSPVCFLHLQVVIENPLELYR
VEVEILDVNDNAPSFPWSEFNLEITESAAPGSRFPLESAQDLDVGSNSLRSYLLSANQHF
LLDIQTRNDGSKFAELVLQSPLDREQQKTHEMVLTAVDGGSPLRSGTAQITVTVLDANDN
VPVFDRSVYRVSLVENAPRGTLVLKLNATDLDEGANGEITYSFSGHAPLKVRELFSVDSH
SGEIRVKGIVDYERASVYELYVQAKDKGPSAVAVHCKVLVDILDVNDNAPEVILTSVSTP
VQEDAPPGTVIAVISVMDRDSGENGAVDCQIPGNVPFQLHSSFKNYYTLVTSEFLDRESV
SEYNITLTARDLGSPPLSTRKTILVQVSDINDNPPRFIQPSYTVYVTENNAPGASICSVT
AFDPDSNQNAYLSYSILEGQIQGMPVSTYVSINSDNGNIYALRSFDYEQLRNFQIRVQAQ
DAGFPPLSSNVTVNVFVLDQNDNAPVILSPLPRNGTVATEMVPRSVDAGYLVAKITALDA
DAGQNSRLSYQVLQATDPGLFSVALYTGEIRTIRRFVDKDAIRQRLVILVKDNGQPPLSA
TVSIILSLVDSVPESLSDFGDLSLSPQPPSNLALYLIVSLSTVSLIFLVAIIVLAAVKCY
KDHDSLGGYALSSLGAACCSFEPEPPAEVFKKSNLNLQISTGAKVPTNCVEVNSNPGNLS
QAYCYKVCLTPESAKSDFMFLKPCSPGTPRNNAARGADNLALSSQSRCSSVNNGATTPNE
LKQANTDWALTKNQTSSLKSCNSVNMDGTLMRKAMQAEPENYVGQMAAGQYWTWGTRSKE
YRMHSPAGVSQRAWTPHYTPQHNPTHHLQQQQQPTAQTHPHPPPDYQHNVYIPGTPSGFC
TLRPSYRSELDVHNSFSTFGKKRRFISPSSYDPHDDTGADVINNDLYNE
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggaccggaggcttccgagaaggcgatggacgttggcagggcaggttgtttgtctgctc
ttgtgtgcgtgcgcactggaccgggttttggcgcagattcgctattcaattcccgaggag
ttggagcacggggctttcgttggaaatatcgcagaggacttgggcttggacgtggccaaa
ttgtcttcacggagattccggattgtatctggagcaagaaaacaatatttagaggtgaat
ttggagaacgggattttgtttgtgaatgagaagattgaccgcgaggagctctgtgaacaa
agtcccgtttgtttcttgcacttgcaggtggttattgagaaccctttggaactgtacagg
gtagaggtggagatcttggacgtgaatgataacgctcccagtttcccgtggagcgagttt
aatctagagatcacggaatctgctgcgcctggctcccggttcccgctggagagcgcgcag
gatcttgacgtgggctcaaattctctccgctcgtacttactgagcgccaatcaacacttc
ctactggacattcagactcgtaacgatggcagcaagttcgccgaactcgttctgcagtcg
ccgttggaccgagagcagcagaagacgcacgagatggtgctcacggctgtggacggtggc
tccccgttgcgctcgggcacggctcaaatcacggtaactgtcctggacgcgaatgacaac
gtacccgtgttcgaccgctccgtataccgggtcagcttggtggagaacgcaccgagaggc
acgctcgtgctcaaactgaacgccacggacctggacgaaggcgcgaacggggagatcacc
tattccttcagcgggcacgcgcctctgaaggtgcgggagctgtttagcgtggactctcac
tcaggtgagattcgggtaaaaggaatcgttgactatgagagggccagcgtgtacgagctc
tacgtgcaggcgaaagacaaaggtccctccgccgtggctgtgcactgtaaagtgctggtt
gatattctggacgtgaacgacaatgcgcccgaggtcatattaacctctgtgtcaacacct
gttcaggaggacgcgccgccgggcacagtgatagccgtgatcagtgtaatggaccgcgac
tccggagagaacggggctgtggactgccagatccccggaaacgtgccgttccagctgcac
tcctcttttaagaactattacacactcgtgaccagcgagtttctcgacagagagtctgtc
tcggagtacaacatcaccctcacggcgcgcgatctgggctcgccgccgctgtccaccaga
aagacgattctggttcaagtgtctgacattaacgacaacccgccgcgcttcattcagccc
tcgtacactgtatatgtgaccgagaataacgccccgggcgcttccatttgctcggtgacc
gcattcgatccggactctaatcagaacgcctatttgtcctactccatcctggagggtcag
attcagggcatgcccgtgtccacttatgtctccatcaattccgataacggcaacatctac
gcgctgcgctctttcgattacgagcagctccggaactttcagatccgcgtgcaggcgcag
gacgccggtttcccgccgctcagcagtaacgtgaccgtcaatgtttttgttttggatcag
aacgacaacgcgccggtcatcctatcaccactgccgagaaacggcaccgtggccactgag
atggtgcccagatcggtggacgctggataccttgtggctaaaatcactgcactcgacgcg
gacgcagggcaaaactctcgcctgtcatatcaggtgctgcaggcgacagatcccgggctg
ttcagcgtggctctgtacaccggggagatcaggacgatccgccgcttcgtggacaaagat
gccattaggcaaagactcgtcatactggtcaaggacaacgggcagccgccgctctcggcc
accgtgtccatcattctctcgctggtggacagcgtgccggagtcgctgtccgatttcggt
gacctctcgctcagcccccagcccccgtctaacctcgcgctctatttaatcgtgtcactg
agcacagtctctctcatcttcctcgtggctatcatcgttttggcggccgtgaaatgctac
aaggaccacgactccctcggcggctacgcgctctcctcgctcggtgccgcttgctgcagc
tttgaaccggagccgcccgccgaggtgttcaaaaagtcgaatctcaacctgcagatctcc
accggcgcgaaagtgcccacgaactgcgtggaggtaaacagtaatcctggaaatctttct
caagcgtactgttacaaagtgtgtttgacgcccgaatctgcaaagagcgactttatgttt
ctcaagccttgcagtcccggcacaccgagaaataacgcggcgagaggagcggataacctg
gcgctgagctcacagagccgctgctcatccgtgaacaacggagcgactacaccgaacgag
ctgaaacaagcaaatactgactgggccctcaccaaaaatcaaacctcctctctgaaaagt
tgtaactctgtgaacatggatggcactctgatgcgtaaagccatgcaggccgaaccagag
aattatgtgggtcaaatggctgccggacagtactggacctggggaacccgctcgaaagag
taccggatgcattctccagcaggggtttctcagagggcgtggacgcctcactacacaccc
caacacaaccccacccaccacctgcagcagcagcagcagcccacggcgcagacccacccg
caccctccaccggactaccagcacaacgtgtacatccccggcacgccctccggcttctgc
accctgcggcccagctaccgcagcgagcttgacgtccacaactctttctccacctttggc
aagaaacgtaggttcatctctcccagcagctatgacccgcatgatgacacgggggcggat
gtcatcaacaatgacttatataatgaataa
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