Ctenopharyngodon idella (grass carp): 127495103
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Entry
127495103 CDS
T08802
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04137
Mitophagy - animal
cide04140
Autophagy - animal
cide04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127495103
04137 Mitophagy - animal
127495103
04148 Efferocytosis
127495103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cide03000
]
127495103
Transcription factors [BR:
cide03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
127495103
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
TLP-20
FAM176
Motif
Other DBs
NCBI-GeneID:
127495103
NCBI-ProteinID:
XP_051717513
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Position
15:complement(28561341..28577593)
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AA seq
638 aa
AA seq
DB search
MVNSVNKRPSLEQRKVRSRDAARCRRSQETEVFYELAHSLPLPRRITSHLDKAAIMRVTL
SYLRMNRLIQSVGPTKTKTEETENPTDGFYQQALAGFILVMTEEGDMIFLSESVSKYIGI
TQLELLGQSVYEFVHPCDQEELRDILTTRPGISKKKTEKLAEHNFFLRMKSTLTHTGRTV
NMKSANWKVLHCTGHMQTFSGDDETSLPAGSFLTLLCEPIPHPSSVEFPLDSSTFLTRHS
MDLTFTQCDGRVTELVGYQPDDLIGRSAYEFYHALDFDHVTRSLHILFSKGQVCTSHYRF
LAKNGGFVWTETQATVLYNSRTSQPEAVVCLNFILSGVEEADVVFSLEQTCQKPKPKAEK
LTVLEEEEEEEKEEEEDSDMEESSTATLFLKIKENPEELMQLAPHSGDTIISLREGVELS
FCQPPSPNSVPECPQDFCTPELRQLLSPIFDRPTKSPPAASPAEELPMEMEGVEKFFALK
PEESVTLKGQSEAMDELDLDMLAPYISMDDDFQLTFLPQSEMAASSEMLTNTSRKRCLED
EEEDDIPVLAAKWEKKQMSSSIEEQLLLSHTLLNGLSDDASEEFEPPPQKRCQLLTDRDP
LLGGAQALCDTAALMKDTFLSRPPDLMRPVAETMPSLT
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggtgaactcggtgaataaaaggcccagtttggagcagcggaaggtgcgttctcgtgac
gcggcacgctgtaggaggagtcaggagactgaggtgttttacgagctggcccactcgctg
ccccttccacgacgcatcacctcccacctggacaaagctgccatcatgagggtgacgctc
agctatctgcgcatgaaccgcttgatccaatccgtggggccgaccaaaacaaagactgag
gaaacggagaatcccactgatggcttttatcagcaggcactggctggctttattctggtg
atgaccgaggaaggggacatgattttcctctcagaaagtgtcagcaaatacatcggcata
acacagctggagcttcttggacagagtgtgtatgagtttgttcatccctgtgaccaagaa
gaattgcgagacatcctcaccacaagaccaggtatttcaaagaaaaagacagagaagttg
gcagaacataattttttcctccggatgaagagcacactcacccacacaggaagaacagtt
aatatgaagtctgcaaactggaaggtccttcattgcacaggacacatgcagacgttcagc
ggtgatgatgagacctcgctccctgctggcagcttcctgacattgctgtgtgagcccatt
cctcacccctccagcgttgaattcccacttgacagcagcactttcctcacacgccatagc
atggacctgactttcacacaatgcgacggacgagtcactgagcttgttggataccaacct
gatgatctgattggccggtctgcctatgagttttatcacgcccttgattttgatcatgtg
accaggagtttacacattttgttctccaagggtcaggtgtgcaccagccattaccgcttc
ctggctaagaatggaggatttgtctggactgagactcaagccactgtcctctacaacagc
aggacttctcaacccgaggctgtggtctgcctcaactttatcctcagtggcgtggaagag
gcagatgttgtgttctcgttggaacagacctgtcagaaaccaaagcccaaagctgagaag
ctgactgtgctggaggaggaggaggaggaggagaaagaggaagaagaggactcagacatg
gaggagagcagcactgcgacgctcttcctcaagataaaggagaacccagaggagttaatg
cagctggcacctcactctggagacactatcatttccctaagagagggtgtggagttgtcc
ttctgccagccacctagtcccaacagtgtcccagaatgccctcaggacttctgtacgcct
gaactccgccagctcctttctccaatattcgacaggcccaccaaatctccacctgctgcg
agccccgctgaagagctgcccatggagatggaaggggtagagaagttctttgccctcaaa
cctgaagagagtgtaactctgaaaggacaatcagaggctatggatgagcttgatttggac
atgctagctccatatatctccatggatgatgacttccagttgacctttctgccccagagt
gaaatggctgcatcttcagaaatgctaaccaacacttcaaggaaacgatgtttagaagat
gaggaggaagatgacattcctgttctggctgccaaatgggagaagaaacagatgagcagc
tccatagaggaacagcttctgctcagccacacattactgaatggcttgtccgacgatgct
tcggaagaatttgaaccgccacctcaaaagcgatgtcagcttttgaccgacagggacccg
ttactgggtggagcgcaggcgttgtgtgatacagcagctctcatgaaggacaccttccta
tcacgcccacctgacttaatgcgacctgttgctgaaaccatgccgtcccttacttga
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