Ctenopharyngodon idella (grass carp): 127495115
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Entry
127495115 CDS
T08802
Name
(RefSeq) RAB guanine nucleotide exchange factor (GEF) 1, like
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
127495115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cide04131
]
127495115
Membrane trafficking [BR:
cide04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
127495115
Protein recycling
Other Rab GTPase associated proteins
127495115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Motif
Other DBs
NCBI-GeneID:
127495115
NCBI-ProteinID:
XP_051717549
LinkDB
All DBs
Position
15:complement(31317258..31329351)
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AA seq
489 aa
AA seq
DB search
MNSQAVRRGFSVQQSDLMCKRGCGYYGNAVWQGHCSKCWREQNQCTKAKQIEEDRALAER
LQREEEAAYASSQEGAQSRPASSRTNSVPMVKRLFTPAPKTPARRDAGSSQTAVSQSSSL
SRQPSTESDHVTQHFIDFLKTFQRPGYEIFKQCHGFTENIARKKVAVCDDLSDSVQDFYQ
NMSEYLQTNFKGSPDVMETVMEEVERYVMGRLYEQLFCPEHTDDEKKDLVVQKRIRALHW
VSIAMLCVPVDEQIPKVSDSVERAITDLINLDSKKVPKEKLACVTRCSKHIMTAIQGSKK
AAASADDFLPTLVYIVLKANPPRLHSNIQYITRYCNPSRLMSGEDGYYFTNLCCAVAFIE
KLDAQSLNLSQEDFELYMSGAASPLGSKATSSGHSSQNGSRAVASSTTVPPADQRNDLPS
GVRQERKAEEPQALEADLIEWKEGQELSVLGILEAAPVRTHTSATFTIDSDNIGGDSLPP
PLQPQKFSS
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgaactctcaggcggtgcgcaggggcttcagcgtccagcagtctgacctcatgtgtaag
aggggatgcggctactacggtaacgccgtctggcagggccactgctccaaatgctggcga
gagcagaaccagtgtacaaaagccaagcagatcgaggaggaccgagcactggccgagagg
ttacagagagaggaggaagccgcgtatgccagcagtcaggagggggcgcaatcacggccc
gcatcctccaggacaaacagcgttcccatggtgaagaggctcttcacccccgctcccaaa
acacccgcacgaagagatgcaggatcttcacagacggccgtgagccagagctcgtccctc
agccgacagcccagcacagagtctgaccacgtcacgcagcacttcattgacttcctcaag
acctttcagagacctggatatgagatcttcaaacagtgccacggcttcactgagaatatc
gcacgcaaaaaggttgctgtttgtgacgatctctcagactctgtgcaggatttctatcaa
aacatgtctgaatacctacagaccaactttaaaggctctccagatgtgatggagactgtg
atggaggaggtggagcgctatgtgatgggccgtctgtatgagcagctcttctgcccggag
cacacagacgacgagaagaaggacctggtcgtccagaagagaatcagggctttgcactgg
gtgtccattgcgatgctgtgtgtcccagtggacgagcagatccctaaagtatcagacagc
gtggagagagccataacagatctgatcaacttggactctaaaaaggttcctaaggagaag
ctggcgtgcgtcaccaggtgtagtaaacacatcatgactgccatccagggcagtaagaaa
gctgccgcctcagcagacgacttcctgcccactctcgtctatatagtgctgaaggccaat
ccgccccgattacactccaacatccagtacatcacccgctactgcaaccccagtcgcctc
atgagtggagaggatggatattacttcactaacctatgctgtgccgtggcgttcatcgag
aagctggatgcgcagtcgctgaacctgagccaggaggactttgagctctacatgtctggt
gcagcatctccattgggctccaaggccacttcctccggccacagctcccagaacggctct
agagctgtagcgagcagcacgaccgtcccgccggcagaccagaggaatgacctgccgtca
ggggttcgacaggaacggaaagcagaggagcctcaagctctggaggctgacctcatcgaa
tggaaggaagggcaggaactctctgtactgggcattttggaagcggctcctgtacggaca
cacacctctgccaccttcaccattgactcggacaacattggcggtgacagcctgcctcct
ccgttacagccgcagaagttttctagctag
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