Ctenopharyngodon idella (grass carp): 127495173
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Entry
127495173 CDS
T08802
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04136
Autophagy - other
cide04140
Autophagy - animal
cide04145
Phagocytosis
cide04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
127495173
04140 Autophagy - animal
127495173
04136 Autophagy - other
127495173
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
127495173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cide04131
]
127495173
03029 Mitochondrial biogenesis [BR:
cide03029
]
127495173
Membrane trafficking [BR:
cide04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
127495173
Others
Specific organelles associated proteins
Auto phagosome
127495173
Mitochondrial biogenesis [BR:
cide03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
127495173
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
ATG16
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
EIF3I
WD40_Gbeta
WDR55
DSE1_N
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_VPS8
ANAPC4_WD40
NBCH_WD40
Beta-prop_NOL10_N
Beta-prop_EIPR1
Beta-prop_NWD2_C
CFAP251_N
eIF2A
Beta-prop_IFT140_1st
Beta-prop_ACSF4
WD40_RFWD3
Tricorn_2nd
Beta-prop_WDR41
Ge1_WD40
Beta-prop_WDR19_1st
KASH_CCD
Beta-prop_SPT8
DUF6049
Beta-prop_DCAF12
DUF7491
Uso1_p115_C
PUMA_CC
NET2A
nos_propeller
Cytochrom_D1
FKBP15
TMA17_helical
DUF6212
CLIP1
PspA_IM30
T3SS_needle_F
Motif
Other DBs
NCBI-GeneID:
127495173
NCBI-ProteinID:
XP_051717781
LinkDB
All DBs
Position
15:complement(37356928..37377059)
Genome browser
AA seq
624 aa
AA seq
DB search
MAGRGVECLWKRHVVDQLKQRDRVQRQAFEEIIHQYNRLLERSDLQVVFSERLQTDKYEH
QNRHDLSPGADGGRNDSLQQEMAQMRIKHQEELTELHKKRGELAQNVIELNNQIQQKDKE
IQSNEAKMLEYQQQISRLEGECRDLRNSLADLERANQTLRDEYDALQITFGALEEKLRKT
AEDNQELVTRWMAEKAQEANRLNAENEKDTRRRQAKLQKELADAAKEPLPIDPDDDIEVL
SEDAGKGTGETSPSRPLSRTSSRRVSQPPAPPPPGGLLDSISNIFGLSDSVQPGFVPSDS
RRRRSMNSFSTSPEAAEVPSACADVRVPSTALHIFDAHDGEVNAVRFSPGSRLLATGGMD
RRVKLWEVVSGRCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHT
LTGHSGKVLSARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVM
SGHFDKKVRFWDIRAETIVNELELLGRVTSLDLNQDRTELLTCSRDDLVKIIDLRSNAVR
QTFNAQGFKCGSDFTRVTFSPDGSYVAAGSADGVLYIWNVLTGKLDKTLDKGHSSAINSV
SWSPSGAYVVSVEKGSKAVLWSDM
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgtggagtcgagtgtttgtggaaacgtcacgttgtggatcagctgaaacag
agagacagagttcagcgtcaggcctttgaggagatcatacatcagtataaccggttgttg
gagaggtctgatcttcaggttgttttttctgaacgtctccagaccgacaagtatgagcat
caaaacagacacgacctcagtccgggcgctgacggcggccgcaatgactccctgcagcag
gaaatggctcaaatgagaatcaaacatcaagaggaactgacggagctgcacaagaagcga
ggagagttggctcagaatgtgattgaactaaacaaccagattcagcagaaagacaaagag
atccagagtaatgaagccaagatgttggagtatcagcagcagatctcccgtctggaaggg
gagtgtcgtgacctccggaacagtctggccgatttggaacgagccaatcagacgctgcga
gacgagtacgatgccctgcagatcacgttcggcgctctggaggagaaactgcggaaaacc
gcggaggacaatcaggagctggtgacgcgctggatggcggagaaagcccaggaggccaac
agactcaacgctgagaacgagaaggacaccaggcgaagacaggcgaagcttcagaaggaa
ttggcggacgcagcgaaggaacctcttcccatagacccagatgatgacattgaagttctc
tcagaggatgctgggaagggaacaggtgaaacgtcaccgagcagaccgctcagtcgcaca
tccagtagacgagtgtctcagcctcctgctcctcctcctcctggtggactgctggactcc
atctctaatatctttggcttgtctgattctgtccaacctggtttcgtcccgtctgactcc
agaagacgtcgctctatgaattcgttcagcacgtctcctgaagccgcagaagtgccgtcg
gcgtgcgctgatgtcagagttccctccactgcgctgcacatcttcgacgcccatgatgga
gaagtgaacgccgtgaggtttagtcccggttcccgtctgcttgccacgggaggaatggac
cgcagggtgaagctctgggaggtcgtgtctgggcgatgtgaacccaaaggggcgctgacg
ggcagtaacgctggaatcaccagtatagagtttgatagtgcgggatcgtatctcctggcc
gcctctaatgatttcgcaagcagaatctggactgttgacgactacagactgcggcacaca
ctcacaggtcacagcgggaaggttttatctgctcgctttctcctcgacaacgctcgaatc
gtctccggcagctacgatcgaacgctcaagctctgggatttacgcagcaaagtctgcatg
aagactgtgtttgctggttctagctgtaatgacatcgtctgcacggagcagtgtgtgatg
agcggacacttcgataagaaagttcgtttctgggacatcagagcagagactattgtgaat
gagttggagttgctgggacgcgtaacatctttggacctcaatcaagaccggaccgagctc
ctgacctgctctcgtgatgacctggtgaaaataatcgatctgcgcagtaatgcagtgcgg
cagacgttcaatgctcaaggattcaagtgcggttcagacttcaccagggtcacatttagt
cctgatggaagctacgtggcggccggttctgcagacggcgttctgtacatttggaacgtt
ctaacagggaaactagacaaaactcttgataagggtcacagttctgccataaattcggtg
tcttggtctccatcgggcgcgtacgttgtcagcgttgagaaaggcagcaaggccgtgctt
tggtctgacatgtga
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integrated database retrieval system
