Ctenopharyngodon idella (grass carp): 127495886
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Entry
127495886 CDS
T08802
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03440
Homologous recombination
cide03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127495886
03460 Fanconi anemia pathway
127495886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cide03400
]
127495886
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127495886
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
127495886
FA (Fanconi anemia) pathway
Downstream FA components
127495886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
ARCH_RTEL1
HBB
PBP_sp32
Motif
Other DBs
NCBI-GeneID:
127495886
NCBI-ProteinID:
XP_051719263
LinkDB
All DBs
Position
15:complement(29842353..29877649)
Genome browser
AA seq
1264 aa
AA seq
DB search
MAAAPVDYTIGGVKINFPCKAYPSQLAMMNSIIRGLNHGQHCLLESPTGSGKSLALLCSA
LAWQKAQFGKEQPDAGTSSADFKKPEVVTPCQCVCHSRNAHPTFNSTASKPPLVDLAGEG
TSAEASTPLSKGAVQSDQPIKSTLSSRLSEKLQASLSNGEQDDDFKIDRKRIRTPGTEQK
SSKRRCLERGVIYIDDDDDEEEENLERPVPGTQSWTMELNSGARADGCQSQPQCPSPVSC
SRCPCANLKAGQKLVEKSKDNEKDKEGSGRKKIPKIFFGTRTHKQITQIARELKRTLYST
VPMTILSSRDHTCVHPEVVPHANRNERCKELLEAKNGVSCRYYHNVHKMRDQSSLQWVHG
LHQAWDIEDLVRLGGKLRSCAYYAARELMQEACIVFCPYNYLLDPLIRESMEINLKEQIV
VLDEAHNIEDCARESASFTLNQAQLLLARDEIDGMVTHNIRRDQHRPLLAFCCSLANWVQ
ESCNGLEEREYESSCKVWTGTEVLGIFHGLGITADTFSLLQKNLAAVLEKEERIGLVNGR
EDTVQVPTISSNTQSMLKSLFMVLEFLFRQNCRFADDYRVALQQSYMWTTQQEPPDAQGF
FARPQRRRQGTRTKTLVHTLSFWCLNPAVAFSDLSDSVRSIVLTSGTLSPMGSFSSELGI
KFSIQLEANHVISKSQVWVGTVGAGPQGRKLCATFQHAETFAFQDEVGALLLKVCHTVSR
GVLCFLPSYKMLDKLRDRWMKTGLWDKLEERKTVITEPRGGGKGDFDELLQTYYEAIRGT
VANSENRDGALLVAVCRGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDKHA
KSRGLLPGGRWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFKTNPNKYITGLSKWVR
QLVRHHDTFTGAMQSLESFSQGQRGAVETFEETQSQTVPQYPSPSSVTSPPPEIITPHKS
FDPQPAPLNLHTEVQAASSESKTSESEKKKSFLEESIREDLEQHERHQKNIQHPSEPITL
PTRERNVQRITWPTGHLFTSSPVSSQFKTSIFQSEQDVNSVNNKQVQQELIPVLPVAPKH
QINVAPDLNDSSFEPQHEQLFVIPNSTLKQNTSGMDLDDTEEDEQSIFYSPELFEGDGGE
NEETTEVEKSPAEVSHPPASSTASILLEDLFGLKQEKRTLSEDVVSSTVPDNTLLQGSTE
QIGLNCGTDFESVPASQNGTSNSRSRRLSRSRQKRPSTSAASGKLTNYFKFVPQTSQPCI
TIDD
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggctccagtggactacaccataggaggggtgaaaataaacttcccctgcaaa
gcttatccctctcagctggccatgatgaattcaatcattcgtggacttaaccatgggcag
cactgtctgttggagagtcctactggcagtgggaagagtcttgctttgctttgttcggcc
cttgcatggcagaaagcacagtttggtaaggaacagccggatgcaggcaccagttcggct
gactttaagaaaccagaagtggttactccatgtcaatgtgtgtgccatagccgaaatgca
catcccactttcaacagcacagcatctaaaccacctctggtggatcttgctggtgaaggt
acttctgctgaagcttcaacccctctgtcaaaaggagcagtccaaagtgaccagcctata
aagtcgactttgtcttcccgtctctctgagaaacttcaagcctctctctccaatggagaa
caagatgatgattttaagattgacaggaagcgcattcgtacaccaggcacagagcaaaag
agcagcaagcgaagatgtcttgaacgaggagtgatttacattgatgatgatgatgatgaa
gaggaggagaatctggagagaccggtgcctgggactcagagttggaccatggaattgaac
agtggtgccagagctgacggctgtcagtcgcagccacagtgtccttctcccgtgtcttgt
tctcgctgtccttgcgccaacctcaaagcaggacagaaactggttgaaaagtccaaggac
aacgagaaagacaaagagggaagcgggaggaaaaagattccaaagatattcttcggcact
cgtactcataagcagatcacacagattgcacgggagttgaaacggacactttactccacc
gtgcccatgacaatactgtccagccgagaccacacctgtgtccaccccgaagtggtacct
catgccaatcgcaatgagcgctgcaaggagctgctggaggccaagaacggtgtgtcatgc
cggtactaccacaatgtgcataaaatgcgtgatcagagctctttacagtgggttcacggg
ctacaccaggcctgggacattgaggatctggtgcgtcttggtggcaagctgcgatcctgt
gcttactacgcagctcgggaactcatgcaagaggcctgcattgtgttctgtccttacaac
tacctgctggaccccctcattcgtgagagtatggaaatcaatctgaaggagcagattgtg
gtgctggatgaggctcataacatagaggactgtgcccgtgagagtgccagtttcaccctg
aatcaagctcagctgttgctggcacgtgatgagatcgacggaatggtgacacacaacatt
cggcgcgatcaacacaggccactgctagccttctgctgcagccttgccaactgggtgcag
gaaagctgcaatggcttggaggagcgcgaatatgagtcttcttgtaaggtctggacaggg
acggaggttcttggcatcttccatggccttggcatcacagcagacaccttctctttgcta
cagaaaaacctggcagcagtgctagagaaggaggagcggatcgggctagtgaacgggaga
gaagatacggtgcaggttcccaccatcagctccaacactcagtcaatgctcaaaagcctc
tttatggtgctggaatttcttttcaggcaaaattgcaggtttgctgatgattaccgtgtg
gctctccagcagagctacatgtggaccacccagcaggagccgcccgacgctcagggcttt
tttgcacgaccccagcgtcgccgacagggtacccgcaccaaaactctggtgcacaccctg
agcttttggtgcctcaaccctgctgtggcattttcagatctaagtgattcagtgcggagt
attgtgctgacttcaggcaccctctctcccatgggctccttttcctctgagctgggcatc
aaattctccatccagctggaggccaatcacgttatcagcaagtcacaggtctgggtcggt
acagttggtgcaggacctcagggtcgtaaactttgtgccacatttcagcatgcagagaca
tttgccttccaggatgaagtaggggccctgcttttgaaagtgtgccacacagtgagtcga
ggggttctctgcttcctgccatcctacaagatgttggataaactgagggaccgctggatg
aaaacaggtctgtgggacaagcttgaggagcgaaagactgtgatcactgagccacgtggt
ggtggcaagggtgattttgatgaactgctgcagacctactatgaggccatcagaggaaca
gtagccaacagtgaaaacagagatggagcgctgctggtagctgtttgcagagggaaggtg
agcgagggcttagacttcaccgatgacaatgccagagcagtggttactattggtatccca
ttccccaatatcaaagacttgcaggttgaactgaagatgaaatataatgacaagcatgcc
aagtcacgaggacttctgcctggtgggcgctggtatgagattcaagcatatcgggcacta
aaccaggcactcggaaggtgtatacgacatcgaaatgactggggggcacttatactggta
gatgaccggtttaagacgaacccaaacaaatacatcacaggcctgtcaaagtgggtgcgt
cagctagtgaggcaccatgacaccttcacgggcgccatgcagtccctggagtccttttct
caaggccagcggggggcagtagagaccttcgaagagacacaatcgcagactgtccctcaa
tacccaagcccctccagtgttacctctccccctcctgagataatcacaccccacaagtca
tttgaccctcagcctgcaccactaaatctacacaccgaggtgcaagcagccagctctgag
agcaagacttctgaatcagaaaaaaagaaatcctttcttgaagaaagtataagagaggat
ttagaacaacatgagcgtcaccaaaagaatatacagcatccttctgaaccaatcacattg
ccaaccagagaacgtaatgtccaaagaataacatggcctacaggccatctcttcacctcc
tctccagtcagtagccaatttaagacttctatttttcaatccgagcaggatgtgaattca
gtgaacaacaagcaagttcagcaggaacttattcctgtgcttcctgtggcaccaaagcac
caaataaatgttgctcctgacctaaatgacagctcatttgaacctcaacatgagcagctc
tttgtgatccctaactctacattgaagcagaacaccagtggaatggaccttgatgacacc
gaagaggatgaacaaagtatcttctacagccctgagctttttgaaggagatgggggggag
aatgaagagactactgaggtggaaaaatctcctgcagaagtcagccatcctcctgctagc
agcacagccagcattcttttggaggatctgtttggtttaaagcaggagaagaggacattg
tctgaagacgttgtgagcagcactgtcccagacaacacattattacagggtagtacagag
cagataggtttaaactgtggtacagactttgagagtgtgcctgcctcacaaaatggcacc
agcaatagtcggtcacgtagactctccagatctaggcagaaaaggcccagcacatcagca
gcatcaggtaaacttaccaactactttaaatttgtgccccaaaccagccaaccgtgcatc
acaattgatgactga
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integrated database retrieval system
