Ctenopharyngodon idella (grass carp): 127496853
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Entry
127496853 CDS
T08802
Name
(RefSeq) polypyrimidine tract-binding protein 1a isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127496853
03041 Spliceosome [BR:
cide03041
]
127496853
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
127496853
Spliceosome [BR:
cide03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
127496853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
127496853
NCBI-ProteinID:
XP_051720690
LinkDB
All DBs
Position
2:complement(13383259..13393648)
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AA seq
572 aa
AA seq
DB search
MDGRLETDLYPLGSSYVTEIDSVHDITVGTKRGSDELFSSCISNGPYIMSSGAANGNDSK
KFKGDIRSPGIPSRVIHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEE
SAQTMVSYYSSVTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQTGGMSLS
AVDGAGMGSQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALVQYSD
GMTAQHAKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPSLD
AQTMAAAALSAPGIISASPYAGAHGFPPTFTIQQAAGLSLQGMPAGALASLGIPGAAAAA
AAAAGRLSFSGLTGGGNSVLLVSNLNPESVTPQCLFILFGVYGDVMRVKILFNKKENALV
QMSDGTQAQLAMSHLNGQKLYGKALRVTLSKHTTVQLPREGHEDQGLTKDYSNSPLHRFK
KPGSKNYSNIFPPSSTLHLSNIPPSVTEDDLRGLFLSSGAVVKAFKFFQKDRKMALIQLG
SVEEAIESLIKFHNHDLGENHHLRVSFSKSTI
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggacggccggttagagactgatctgtatcctctgggatccagttacgtcactgaaata
gacagtgtccatgatataacagtcggcacaaagaggggatctgacgaactcttttcctcc
tgcatatctaacggaccttatataatgagctctggagcagcaaatggtaatgacagcaag
aagttcaaaggggacatcaggagccctggcattccttcacgagtcatacatgtgcgcaaa
ctgccaaatgacataaacgaagcagaagtcatttctttggggcttccctttggcaaagtg
actaaccttctgatgctgaaaggaaagaaccaggccttcctggagatgaacactgaggag
tcagcacagaccatggtcagctactactcctctgtcacccctgtcatccgcaaccatcca
atcttcatgcagtattccaatcacaaggagctgaagactgacaactcacccaaccaagtt
agagcacaggctgcactgcaggcggtgaatgcagtccagacaggaggcatgtctttgagc
gctgttgatggagcaggcatggggagccaaagccctgtgctgagagtaatcgttgaaaac
ctcttctacccggttactcttgatgtccttcaccagatcttctcaaagtttggcacagtt
ttgaagatcataacctttaccaaaaacaaccagttccaagcactggtccagtactcagac
ggaatgactgcacagcatgcaaagctgtctttggatggacagaacatctacaatgcctgc
tgtacccttcgcatcagtttttctaagctcaccagcctgaatgttaagtacaacaacgat
aagagcagagactacactcgtcctgacctacctacaggagacagtcagccctcccttgat
gcacagacgatggctgcagctgccttgtctgctcctggtatcatctctgcatcgccatat
gctggggctcatggtttcccaccaacatttaccattcagcaggcagcaggtctgtctctg
cagggcatgcctgccggggctctcgcatcactcggtattcccggtgctgcggccgccgcc
gccgccgctgctggacgcctgagtttttccggtctcactggaggaggaaacagtgtcctg
ctagtcagcaaccttaaccctgagagcgttacgccccaatgcctctttattcttttcggt
gtgtatggtgacgtcatgagagtgaagatcctgttcaacaagaaggagaatgcattggtg
cagatgtctgatgggacccaagcccagctagccatgagccacttgaacgggcagaaactg
tatggtaaggctttgcgggtcaccctttccaaacacaccacggtacagctgccacgtgaa
ggccatgaggatcaggggctcaccaaggactacagcaactctcctcttcaccgcttcaaa
aagccaggctccaagaactactccaacatcttccctccctcctctactctccatctctcc
aacatccctccttctgtcactgaggatgatctcagaggattgtttctaagttcaggagct
gtggttaaggccttcaagtttttccagaaagaccgtaaaatggctcttatccaattgggc
tctgtggaggaagcaatcgagtctctgatcaagtttcacaatcatgacctgggagagaac
catcacctcagagtgtccttctccaagtccaccatctga
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