Ctenopharyngodon idella (grass carp): 127497218
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Entry
127497218 CDS
T08802
Name
(RefSeq) LIM domain-containing protein 1
KO
K16682
LIM domain-containing protein
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127497218
03036 Chromosome and associated proteins [BR:
cide03036
]
127497218
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127497218
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
127497218
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
zf_RING_Vps8
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
127497218
NCBI-ProteinID:
XP_051721510
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All DBs
Position
16:complement(3340868..3386747)
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AA seq
563 aa
AA seq
DB search
MDKYDDLGLEASKFIEDLNMYEASKDGLFRVKRDAGNNPDFEETRRVFASKMTKIHMQKQ
QEEMARSESLPARINGSNSKVSDNTFNTKDRPPINSYRQGGEAAAKPPIMSGPMVGTANV
TQYISYEGQKHHSAGLHEGSSSRGYDSKETGNAVNPVPVPARASPSTSPPGTWASRSGYP
SQVPSSPFSNSSSSHGAHSPVSQGFSQTFAPSGKSPSQSPTGTYRDSYHQALQVSPGQPI
SAQWSASGPTYQNGAAHNIGTPSLTQVTPPPLSHGGKQGEPLQPSNPTTAVSTPAAPVES
SRDESSSPSRALKLPCQTLQVQTDQGPSAAEIKLEALTERLEKEMDVQPKAEYFGSCVKC
NKAVYGASQACQAMGSLYHDSCFTCSACSRKLRGKAFYYVCGKVFCEEDFLYSGFQQSAD
KCNVCGHLIMDMILQALGKSYHPGCFRCAICNESLDGVPFTVDTENKIYCVKDYHRVLAP
KCAACNQPILPSEGSDETIRVVSMDKDYHVECYHCEDCHMELNDEEGHRCYPLDGHLLCH
ACHLKHIDPAAPLSAANSYHSQF
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggataaatacgacgatttgggacttgaggcgagtaaattcatcgaggacttgaacatg
tatgaagcatcgaaggatggcttatttcgcgtgaagagagatgcaggaaacaacccggat
tttgaagaaacgaggagagtttttgcctcaaaaatgaccaaaatacacatgcaaaagcag
caagaggagatggcaagaagcgaaagtttgccagcaaggatcaatggaagtaattcaaaa
gtgtcagataacacatttaacaccaaagacagaccacccatcaatagttatagacagggg
ggtgaagcagcagccaaaccacccatcatgtctggaccaatggttggcaccgccaatgtg
actcaatacatatcttatgaaggacaaaaacatcattcagccggcttacacgaaggatcc
agcagcaggggttatgacagtaaggagactggaaatgctgttaacccggtaccagtgcca
gcccgggcatcaccctcaaccagcccccctggcacatgggcgtcaagaagcggttacccc
tctcaggtgccatcatctcctttctcgaacagttctagctcacatggagctcattctcca
gtgtcccagggcttctctcaaacctttgccccatcagggaagtctccctcacagtcaccc
acaggaacatatagggattcatatcaccaggctcttcaagttagccctggccaacccatc
tctgcccagtggtctgccagtggaccaacataccagaacggggcagctcataacattggc
accccctcccttacccaggtgaccccacctccactgtcccatggagggaagcaaggtgag
ccacttcaacccagtaacccaacaacggctgtttccacaccggcggcccctgttgagtcg
tcccgtgatgagtcttccagcccttctcgggcactcaaactgccatgccagaccctccaa
gtacagacagatcaggggccatctgcggctgaaataaaattagaagctctaactgaacgg
ctggaaaaggagatggacgtccagccaaaggctgagtactttggaagttgtgtgaagtgc
aacaaggctgtttatggagccagtcaggcgtgtcaggccatgggcagcctgtaccatgac
agctgcttcacctgtagcgcgtgcagtcgaaagctccggggaaaagccttttactacgtc
tgtgggaaagtcttttgtgaagaggacttcctgtactctgggttccagcagtctgccgac
aaatgcaacgtgtgtggtcatttaatcatggacatgatcctgcaggcgctgggaaagtct
taccacccaggctgcttccgctgtgccatctgtaatgagagtttggacggagtgcctttc
actgtggacacagagaataagatctactgtgtgaaggactaccacagagttctagcacct
aaatgtgcagcatgtaatcagccgatcctgccctctgagggatcggatgaaaccattcga
gtggtctccatggacaaggactaccacgtggagtgctatcactgtgaggactgtcacatg
gagttgaatgacgaggagggtcaccgctgctatcctctggacggacacctgctctgtcac
gcatgtcacctcaaacacatcgaccctgccgcccctctgtctgcagcaaacagctaccac
agtcagttttaa
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