Ctenopharyngodon idella (grass carp): 127497366
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Entry
127497366 CDS
T08802
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127497366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127497366
03036 Chromosome and associated proteins [BR:
cide03036
]
127497366
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127497366
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127497366
mRNA degradation factors
5'-3' decay
Decapping complex
127497366
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127497366
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
127497366
NCBI-ProteinID:
XP_051721746
LinkDB
All DBs
Position
16:25230477..25238183
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AA seq
483 aa
AA seq
DB search
MATARTEIPASVMQMTKQNGQSKPMTLQSGSLTSSTQSGKTPMMPQKGSSIPQSSGGIRF
GDDWKKCLQLPPKDMRVRTTDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IVLSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHVQALVMVPTRELALQVSQISINMS
KHLGGIKVMATTGGTNLRDDIMRLDETVHVIIATPGRILDLIKKGVAKVDKAQMVVMDEA
DKLLSQDFVVLIEDIISFLPKNRQILLYSATFPISVQKFMSKHLQKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRY
GHLGLAINLITSEDRFNLKGIEDQLMTDIKPIPSSIDKSLYVAEFHSMNPDEEEAAHKPG
ELN
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcgagaacagagatccctgcttcagtcatgcaaatgaccaaacagaatgga
cagtccaagcctatgaccctccagtcaggatcgcttacttcctcaacacagtcaggaaaa
acacctatgatgccccagaaaggaagcagtataccacaaagcagtggcggtatcaggttt
ggagatgactggaagaagtgcctgcaacttccaccgaaagacatgagagtgcgaaccaca
gatgtgaccgcaactaaggggaacgaatttgaagattactgccttaagagggaactgctg
atgggtatatttgagatgggctgggagaagccttcccctatccaggaggagagtattccc
attgtcttgtcagggagggatattctcgcccgagctaaaaatggcacaggtaaaagtgga
gcctacctcatccccctcttggaaaggattgatctgaagaaggaccatgttcaagcctta
gtgatggtaccaactcgtgagttggctctgcaggtgagccagataagtatcaacatgagc
aagcaccttggtggcatcaaggttatggctacaacaggtggcaccaacctgagggatgac
atcatgcgtcttgatgagactgtacatgttataatagctaccccaggaaggatccttgac
ttgataaagaaaggtgtggccaaggttgacaaagctcagatggttgtcatggatgaggct
gataagttgctttctcaagactttgtggtgcttattgaggacatcatcagcttcctgccc
aaaaaccgtcagattcttctctattctgccactttccccatcagtgtgcagaaatttatg
tccaaacaccttcagaagccatatgaaatcaatctgatggatgagctgacactgaaaggc
atcactcaatactatgcctatgtgacagaaagacagaaagtgcactgtctcaacacattg
ttctcaaggctccaaatcaaccagtctatcatcttctgtaactccactcaaagagtggaa
ctccttgccaagaagatcacacagcttggctattcttgcttttacatccatgccaagatg
atgcaggaatacagaaatcgtgtgttccatgacttcagaaacggactgtgtaggaacctg
gtctgcacagatcttttcacaagaggaattgacatccaggctgtcaatgtagtcatcaac
tttgacttccccaaaaacgcagagacatacttgcaccgtattggtcgatcaggtaggtac
ggtcacctgggtctggccattaacctgatcacttcagaagatcgtttcaacctaaagggc
attgaggaccagctgatgactgacataaagcccatacccagcagcattgataagagcctg
tatgtggcggagtttcactccatgaaccctgacgaggaggaggctgctcacaaaccaggc
gagcttaattaa
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