Ctenopharyngodon idella (grass carp): 127497737
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Entry
127497737 CDS
T08802
Name
(RefSeq) nuclear receptor ROR-alpha B isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cide03000
]
127497737
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cide03310
]
127497737
Transcription factors [BR:
cide03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
127497737
Nuclear receptors [BR:
cide03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
127497737
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
CTNNB1_binding
Motif
Other DBs
NCBI-GeneID:
127497737
NCBI-ProteinID:
XP_051722387
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All DBs
Position
16:complement(11120821..11162702)
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AA seq
508 aa
AA seq
DB search
MENDEPESPDPNHDNTQGKRGNSVHKKSHLTQIEVIPCKICGDKSSGVHYGVITCEGCKG
FFRRSQSSSVQYSCSRQSNCPIDRASRNRCQSCRLKKCVAQGMSRDAVKFGRMSKRQRDS
LFAEVERHRQQQRLQANSVQEPQSLPAYQSSKEPREQSSHLIPPLPPAYPYSVEPELPGC
PPEVHPYLECRIGEAQAQSLAYRSSHRRGESNSLSAGRGFDSTRSTPEAILNMNGSEMGF
RPFDPESSFFSYPTSLHIEEISASIVRSHRETTQYRPEELQALRWKVFSREEIHIYQSKS
VDEMWQHCAVRLTDAVQYVVEFAKRIPGFRQLCQNDQIALLKSGSMEVVLVRMSRMFNTE
NNTVFFDGKFAGTELFKSLACSDLIAAVFDFAHNLCALRLTEQQMAVFTALVLINAVDRP
CLEDRERVQKVRRDVELALSHILHRDNQESLLHKLYQRVPVLKSLCALHIEKLRWFRQLY
PLTVHSLFPPLYKELFGSDTDIQTLTTH
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgatgagcccgaatcgccggacccgaaccacgacaacactcagggtaaaaga
ggaaattcagtgcacaagaaatcccatctgactcagattgaggtgattccatgtaagatc
tgtggagataagtcttcaggggttcattatggagttatcacttgtgagggctgcaagggc
tttttccgcagaagtcagtcctccagcgtgcagtactcgtgctccagacagagcaactgc
cccatcgaccgcgccagccgtaaccgctgccagagctgccgcctcaaaaaatgtgtcgcc
caggggatgagccgcgatgctgtgaagtttggccgcatgtccaagcgtcagagagactcg
ctgtttgcagaagttgagagacatcgacaacagcagcgtcttcaggccaactcagtccaa
gagcctcagtctctcccagcctaccaatccagcaaagagcccagagaacagtcatcacat
ctcatcccgcctctacctccagcctacccttattctgtagagcctgaactgccaggctgc
ccaccggaggtgcatccatacctggagtgccgcataggcgaggcccaggctcagagtctg
gcctacaggagctcccacaggagaggtgagagcaacagcttgtcagctggtagaggattt
gattctacacggtctacaccagaggctattctgaatatgaacggcagtgaaatggggttt
cgtccttttgaccctgagagctcgttcttttcctatccgacctctttgcacatagaggag
atctcggcaagtatcgttcgttctcacagagagacaactcagtatcgaccggaggaactg
caggctctcagatggaaggttttcagcagggaggagatccacatttaccagagcaaatcg
gtggatgagatgtggcagcactgtgcggtgcggttgaccgatgccgttcagtatgtggtg
gaatttgctaaacgtatcccaggattccgtcagctttgtcagaatgatcaaattgctctc
ctcaagagtgggtccatggaagttgttctggtccggatgagtcggatgtttaacacagaa
aacaacacagtattttttgacggcaaatttgcaggaacagaacttttcaaatctctcgca
tgtagcgatctaatagcggctgtatttgactttgctcacaatctgtgtgcgctgagactg
actgaacagcagatggcggtgttcactgcactggtcctcatcaatgcagtagatcgacca
tgtctggaagacagagaaagagtgcagaaagtaaggagagatgtggagcttgctcttagt
cacatcctgcacagagacaatcaggagagtctactgcataagctgtatcaaagagtgccg
gtgctgaagtctctgtgtgcactgcatattgagaaactgcgatggtttcggcagctttac
cctctcacggtgcattccctcttccctccactatacaaagagctgttcggctctgacacg
gatatacagacattgactactcactaa
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