Ctenopharyngodon idella (grass carp): 127497760
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Entry
127497760 CDS
T08802
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cide00535
]
127497760
Proteoglycans [BR:
cide00535
]
Extracellular matrix (ECM) proteoglycans
Others
127497760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
FN3_Tor_3rd
VWA_3
Arylsulfotran_N
Motif
Other DBs
NCBI-GeneID:
127497760
NCBI-ProteinID:
XP_051722445
LinkDB
All DBs
Position
16:complement(14083332..14238644)
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AA seq
1876 aa
AA seq
DB search
MQVSGSRIKLWCPLILLALIQFFAPVSAQVPVPRRLRFKVLSAGKLLVSWKEPKGEYDGY
KFIYNTEPGGETSELQIARGENKAIIKDFNPRKEYSVKVIAVSGNLHSRALQGKYTAEDQ
SSDGDTTQPQNLKEAGPVEEGNEISGVDQFVCTTPAIADIVILVDGSWSIGRINFRLVRM
FLENLVNAFDVGIDKTRIGLAQYSGDPRIEWHLNGFSTKDAVIDAVKNLPYKGGNTLTGL
ALTYILENSFKPESGARADVPKIGILITDGKSQDDVIPPAQTLRSSGVELFAIGVKNADE
NELKAIASEPEGTHVYNVADFSIMSTILDGLTRKVCDGVEQQDKEINRDSSTEETVSPPQ
DLVISEVTAHSFRVSWTHASGSVEKYRVVYQPTRADILEEIVVGGTENSVVLQNLNSLTE
YEIAVFAVYRSAASDALRGNEITLALPTVSDLELYEVTDNSMRARWRDAEGASGYMILYA
PLSSETTDERELKVDETVTDVELKGLIPDTEYTVTVYAMFGEEASDPATVQETTMSLRPP
RNLRVTEVDHSSVRLNWDAVSNKVKGYRVIYIKTDGVQTNEVELGPVTNVYLKNLSPLTE
YTVGVFALYDAGQSEALSGGFTTKLVPAPFSLMTSEVTSESFRVSWSHPARDVVLYKMAW
SPTGGGDEREMMLNGAVDSYVIQDLSPFTEYKVSLSAIYNDETESNAVVVLENTLDWTTE
VPTTIPSTTAIVHLGLTNLWVDEETHFSMQVNWEVLDSDVEQYKVTYVSADRTEETVLVL
GNRRSVILQPLLSDTRYKITVTPIYADEESTALSMSSSGKTMPLPGPSNLKVSDEWYNRF
RISWDGPQFPTMGYRVIYQPISVSGPALETFVGDDVNTLLILNLLSDTEYSVQVIASYTT
GSSQPLTTKGKTLFLGVSNLSTKQVLSTSMCAQWQPHHHASLYRVVIESLLNGQKQERRV
GGGASRECFFNLSPNTQYKISVYTLSQDTEGPAVTTMATTAPAPTQPPTSPPTTIPPPTI
PPAKEVCKAAKADLAFLVDGSWSIGDDNFQKIIRFLYSTTGALDVIGPEGTQVAIAQFSD
DARTEFKLNSYSDKEALLDAVQRITYKGGNTKTGRAIKHVKEAIFTEDAGVRRGIPKVLV
VLTDGRSQDDVNKISKEMQMEGYIIFAIGFADADYGELVNIASKPSERHVFFVDDLDAFK
KIEEQLITFVCEAATATCPSVLMSGNTLAGFRMMEMFGLVEKHYSSVQGVSMEPGTFNSF
PCYRLHKDALVSQPTRYLHPEGLPSDYTISMLFRILPETPQEPFALWEILDKNNEPLVGI
ILDNGGKTLTFFNYDYKGEFQTVTFEGTEIKKIFYGSFHKLHVAISKTAAKVVIDCKTVG
EKSINAAGNITIDGVEVLGRMVRSRGSRENSAPFQLQMFDIVCSISWASRDKCCELPGLR
VEEDCPAMPHACTCAQDSKGPPGPSGPPGGPGIRGSRGDRGEPGLTETAGHSHFVSAARL
VGPQGPPGEMGPLGPQGPPGPQGPNGLSIQGAPGAPGEKGEKGEIGLPGPQGVPGASGGP
GRDGPPGQRGLPGKDGPQGRLGPPGPMGSPGAPGAPGSSGPPGQTGDQGLPGPPGTKGER
GERGDMQSQAAVRAIARQVCEQLIQSHLSRYNSILNQIPSQSVSVRTVQGPPGEAGRPGP
PGPQGEQGPPGRPGFPGASGQNGRPGERGLPGERGEKGNPGVGTQGPRGPPGPPGPPGEG
RTGSQGPPGRPGIQGTSGRPGTPGSPGAAGPPGYCDQNSCLGYNAGVQQLPSNPYQNYGP
ATNYDDEEDDEDPYRGYRAYPPQFYQPSYPDPHASRLGPAHPGDTVGMRSPGMRRFSRST
AEDGSIGESEVQVKAE
NT seq
5631 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtgtcgggatcgaggattaagctgtggtgtccgcttatcttgctggcactgatt
cagtttttcgcccctgtttctgctcaagttccagttccaagaagacttcgatttaaagtt
ctgagtgcaggcaagctacttgtctcatggaaagaaccaaaaggagaatatgatggctac
aaatttatatataatactgaaccaggtggggaaacaagtgagttgcaaattgcaagggga
gagaataaagcaataataaaggattttaatcccaggaaggagtattcagtcaaggttata
gctgtgagtggaaacctgcacagccgagcacttcagggaaaatatactgcagaagaccaa
agcagtgatggagacaccactcaacctcaaaatctgaaagaagctggacctgtggaagag
ggcaatgagatctcaggagtggatcagtttgtctgcacaactcctgccatcgcagatatt
gtcatcctggttgatggatcatggagtattggaagaatcaatttccgtctggttcgcatg
ttccttgaaaacctggtcaatgccttcgatgtggggatagacaaaacccggattggactg
gcccagtacagtggagatccaagaattgagtggcacttgaatggcttcagcacaaaagat
gcagtaatagatgctgtcaaaaacctgccttacaagggaggcaacactctcacaggtctt
gctctcacctatatcctggagaacagcttcaaacctgagtctggggctcgtgccgatgtt
cccaaaattggaatcctgataaccgacggcaaatcccaggatgacgttatcccacctgct
cagaccctgagaagttctggagtcgaattatttgccattggtgtgaagaatgctgatgag
aacgagctgaaggccattgcctctgaaccagagggcacacacgtttataatgtggctgac
ttcagtatcatgagcacaatattggatggtctgactaggaaggtgtgtgatggagtggag
caacaggacaaagaaataaatcgagattcttccactgaagaaactgtgtccccaccccag
gacttggtcatttctgaggtgactgcacacagttttcgtgtgtcctggactcatgcgtct
ggaagtgtggaaaaatatcgggtggtttaccaaccaaccagagcagatattctggaagag
attgtggtgggcggcacagagaattcagttgtcctgcagaatttgaactctctgactgaa
tacgagattgctgtgttcgctgtgtaccgcagcgcagcgagtgacgctctcagaggaaac
gagatcacgctggctctacccacagtgagtgatcttgagctgtacgaagtgacagacaac
agcatgagagcccgctggagggatgcagaaggggcttctgggtacatgatcctttacgct
ccactgagcagtgagactacagatgaaagagagctaaaggtggatgagacagtgactgat
gtggaactgaagggattgattcctgacacagagtacaccgttacggtctatgccatgttc
ggagaggaggccagtgatcccgctactgttcaggagaccaccatgtccctgagacctccg
cgtaatctgcgggtcactgaagttgaccacagctctgtccgtctcaactgggatgcagtg
tccaataaagttaagggctaccgtgtcatatatatcaagacagatggtgtccagaccaat
gaggtggagttgggtcccgtcaccaatgtgtacctgaaaaacctgtcacccttaacagag
tacacagttggtgtttttgctctatacgacgccggccaatcagaggctctcagtggcgga
ttcactacaaagcttgtgccagccccttttagcctgatgacatcagaggtcacctcagag
agtttccgggtgagctggtcacatcctgccagggatgtggtgctttataagatggcctgg
tctcccactggaggaggagacgagagagagatgatgctgaatggagctgtggactcatat
gtgattcaagacctgagtccttttacagagtataaggtgtcactgtcggccatctataat
gatgaaacggagagcaacgctgtggttgtgcttgaaaatacattggactggaccacagaa
gttccaaccaccattccctccactacagcaattgttcatctgggattgactaacctatgg
gtggacgaggagacccacttcagtatgcaagtgaactgggaggtgctggactcagacgtg
gagcagtataaagtgacatatgtcagcgcagaccgcacagaagagacagtattagtcttg
ggaaacagaagaagcgtgatcctgcaaccactcctctcagacacaaggtacaagatcacg
gtgacccctatttatgcagatgaagagtccacggcactatccatgtcctcttccggcaaa
acaatgccacttcctggccccagtaacctcaaggtgtctgatgaatggtacaatcgcttc
cgcatcagctgggacggacctcagttccccactatgggttacagggtcatctaccagcct
atctctgtgtcaggtccggctctagagacgtttgtaggagatgatgtaaacaccctgctg
atcctcaatctgttgagtgacactgagtacagcgttcaggtcatcgcctcctacaccacc
ggatccagccaacccctcaccaccaagggcaaaacactgttcctgggggtgagcaatctc
agcacaaaacaggtgctcagtaccagcatgtgtgcccagtggcaacctcaccaccatgcc
tccctctaccgagtcgtcattgagtcactgctcaacggtcagaaacaggaaaggagggtt
ggtggtggtgcatccagagagtgcttctttaacctttcccccaacacccagtacaagatc
agcgtctacaccctttcacaggatacagagggccctgccgtcaccaccatggcgaccact
gctccagcacccacccagccaccaacctcaccacccaccacgatccctcctcctaccatc
cccccagccaaagaagtttgcaaagcagccaaggcagacctggccttccttgtagatggc
tcctggagtatcggagatgacaactttcagaaaattatccgtttcctatacagcacaact
ggtgcacttgatgtgattggccccgagggaacacaggtggccattgctcagttcagtgat
gatgccagaactgagttcaagctcaactcctatagcgataaggaagctctgctggatgcc
gtgcaacgcatcacatacaagggaggaaacaccaagacaggtcgagccattaagcatgtg
aaggaggccatctttactgaggacgcgggcgtacggaggggcattcctaaagtgctggtg
gtgctcacggacgggcgctctcaggatgatgtcaacaagatctccaaggagatgcagatg
gagggatacatcatctttgccattggcttcgctgatgctgactacggggagctggtgaac
attgccagcaagcctagcgaaagacatgtgttctttgtggacgatctggatgccttcaag
aaaattgaggaacagctcataacttttgtttgtgaggctgcaactgccacttgcccctcg
gtgttaatgagtgggaacactttagctggtttccgtatgatggagatgtttggtttggtt
gagaagcactacagcagtgtgcaaggtgtctcaatggagcctgggacttttaacagcttc
ccctgctaccggttacacaaggacgccctcgtctcccagcctaccaggtatctacatcct
gaaggccttccctccgactacactatatctatgctctttcgcatactgcctgaaactcct
caggaaccttttgcattgtgggaaatccttgacaaaaacaatgagccactggtgggcatt
atcctggataacggagggaaaacattaacctttttcaattacgactacaagggtgaattt
caaacggtgactttcgaaggaactgaaatcaagaagattttctatggcagtttccataag
cttcatgtggccatcagcaaaaccgccgctaaagtggtgatcgactgcaaaacggttgga
gagaaatccatcaatgccgcaggtaacatcaccattgatggagtggaggttctgggacgc
atggtccgctcacgtggaagcagagagaactccgcgccgtttcagctccagatgtttgac
atagtctgcagtatatcatgggccagtcgggataagtgctgtgagctcccaggcttgaga
gtagaagaggactgtcctgccatgccccatgcctgcacctgtgctcaggacagcaaagga
ccacctggaccctcgggaccaccgggcggtcctggtatcagaggttcaagaggagatcgg
ggggagccaggcttgacggagactgcagggcattcacactttgtttcagcagcccggctg
gtggggcctcaagggccacctggtgagatgggacctttaggaccacaggggccaccgggt
cctcaggggccaaatggactgtccattcagggggcacctggggctccaggagagaaagga
gagaagggtgaaataggtctgccaggtcctcagggtgtaccaggtgccagtggaggacca
ggccgagatggacctccaggacaaagaggtctaccgggtaaagatggaccccagggacga
ctgggccctccaggaccaatgggcagccctggtgctcctggggctccaggatcaagtgga
ccaccagggcaaactggtgatcaggggctacctgggcctcccggcactaaaggcgaacga
ggagagagaggtgacatgcagtctcaggccgctgtccgcgccatagcaagacaagtttgt
gaacagctcattcagagtcacttgtctcgctacaactctatcctgaaccagattcccagt
cagtctgtttcagtacggacagtacaaggtccaccaggtgaggccggtcggccaggacct
ccggggccacagggagagcagggtcctcctggcagaccaggattccctggagccagtggg
caaaatggccgcccaggagagagaggtctccctggagaaaggggagagaagggcaatcca
ggggtagggacacaaggtcctcgtggtcctccaggacctccagggcctcctggagaaggt
cggacaggaagtcagggccctccagggagacctggaattcaaggcacctcaggacgtcca
ggtacccctggtagccctggtgctgctggaccccccggctactgtgaccagaactcctgt
ctcgggtacaacgctggagtacaacagttaccctccaacccctaccaaaactacggcccc
gccaccaactacgacgacgaggaggatgacgaggacccttaccgtggctaccgtgcctac
cctcctcagttctaccaacccagctaccctgacccccatgcctccaggcttggccccgcc
caccccggtgacacggtggggatgaggtcacctggcatgcgtcgcttctcccgcagcacg
gccgaagacgggagcatcggtgagtcggaagtacaagtgaaggccgaatag
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